Publications HAL de la structure 425649

Journal articles

titre
Controlling the error on target motion through real-time mesh adaptation: applications to Deep Brain Stimulation
auteur
Huu Phuoc Bui, Satyendra Tomar, Hadrien Courtecuisse, Michel Audette, Stéphane Cotin, Stéphane P A Bordas
article
International Journal for Numerical Methods in Biomedical Engineering, 2017, pp.1-26. ⟨10.1002/cnm.2958⟩
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An error-controlled mesh refinement procedure for needle insertion simulations is presented. As an e .....
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https://hal.science/hal-01672962/file/ijnmbe_2017_adaptivity_brain_Bui_et_al.pdf BibTex
titre
Non-rigid Contour-Based Registration of Cell Nuclei in 2D Live Cell Microscopy Images Using a Dynamic Elasticity Model
auteur
Dmitry V Sorokin, Igor Peterlik, Marco Tektonidis, Karl Rohr, Pavel Matula
article
IEEE Transactions on Medical Imaging, 2017, 37 (1), pp.173-184. ⟨10.1109/TMI.2017.2734169⟩
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The analysis of the pure motion of subnuclear structures without influence of the cell nucleus motio .....
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https://inria.hal.science/hal-01613732/file/Sorokin_Registration.2016.pdf BibTex
titre
Real-time Error Control for Surgical Simulation
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Huu Phuoc Bui, Satyendra Tomar, Hadrien Courtecuisse, Stéphane Cotin, Stéphane Bordas
article
IEEE Transactions on Biomedical Engineering, 2017, pp.12
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Objective: To present the first real-time a poste-riori error-driven adaptive finite element approac .....
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https://inria.hal.science/hal-01514621/file/TBME_2017_error_controlled_refinement_final.pdf BibTex
titre
Multiorgan Motion Tracking in Dynamic Magnetic Resonance Imaging for Evaluation of Pelvic System Mobility and Shear Strain
auteur
Zhifan Jiang, Jean-François Witz, Pauline Lecomte-Grosbras, Jeremie Dequidt, Stéphane Cotin, Christelle Rubod, Christian Duriez, Mathias Brieu
article
Strain, 2017, 53 (2), ⟨10.1111/str.12224⟩
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Female pelvic disorders have a large social impact, the diagnosis of which relies on a key indicatio .....
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https://inria.hal.science/hal-01496177/file/Multiorgan%20Motion%20Tracking%20in%20Dynamic%20MRI%20%282017%29.pdf BibTex
titre
Blood vessel modeling for interactive simulation of interventional neuroradiology procedures
auteur
Erwan Kerrien, Ahmed Yureidini, Jeremie Dequidt, Christian Duriez, René Anxionnat, Stéphane Cotin
article
Medical Image Analysis, 2017, 35, pp.685 - 698. ⟨10.1016/j.media.2016.10.003⟩
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Endovascular interventions can benefit from interactive simulation in their training phase but also .....
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https://inria.hal.science/hal-01390923/file/medima_20161008.pdf BibTex
titre
Brain-shift compensation using intraoperative ultrasound and constraint-based biomechanical simulation
auteur
Fanny Morin, Hadrien Courtecuisse, Ingerid Reinertsen, Florian Le Lann, Olivier Palombi, Yohan Payan, Matthieu Chabanas
article
Medical Image Analysis, 2017, 40, pp.133 - 153. ⟨10.1016/j.media.2017.06.003⟩
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Purpose. During brain tumor surgery, planning and guidance are based on pre-operative images which d .....
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https://hal.science/hal-01560157/file/MEDIMA_1264.pdf BibTex

Conference papers

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titre
Automatic biomechanical graph matching CT-CBCT fusion
auteur
Jaime Garcia Garcia Guevara, Igor Peterlik, Marie-Odile Berger, Stéphane Cotin
article
Surgetica 2017, Nov 2017, Strasbourg, France
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Image-guided hepatic surgery is progressively becoming a standard for certain interventions. However .....
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https://hal.science/hal-01587952/file/GarciaGuevaraSurgetica2017.pdf BibTex
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titre
DejaVu: Intra-operative Simulation for Surgical Gesture Rehearsal
auteur
Nazim Haouchine, Danail Stoyanov, Frederick Roy, Stéphane Cotin
article
Medical Image Computing and Computer Assisted Interventions Conference MICCAI 2017, Oct 2017, Quebec City, Canada
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Advances in surgical simulation and surgical augmented reality have changed the way surgeons prepare .....
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https://hal.science/hal-01542395/file/dejavu-249.pdf BibTex
titre
Silhouette-based Pose Estimation for Deformable Organs Application to Surgical Augmented Reality
auteur
Yinoussa Adagolodjo, Raffaella Trivisonne, Nazim Haouchine, Stéphane Cotin, Hadrien Courtecuisse
article
IROS 2017 - IEEE/RSJ International Conference on Intelligent Robots and Systems, Sep 2017, Vancouver, Canada
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— In this paper we introduce a method for semi-automatic registration of 3D deformable models usin .....
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https://hal.science/hal-01578815/file/Iros2017%281%29.pdf BibTex
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titre
An Immersed Boundary Method for Detail-Preserving Soft Tissue Simulation from Medical Images
auteur
Christoph J Paulus, Roland Maier, Daniel Peterseim, Stéphane Cotin
article
Computational Biomechanics for Medicine, Sep 2017, Quebec, Canada
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Simulating the deformation of the human anatomy is a central element of Medical Image Computing and .....
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https://inria.hal.science/hal-01578447/file/2017_MICCAI_workshop.pdf BibTex
titre
Image-driven Stochastic Identification of Boundary Conditions for Predictive Simulation
auteur
Igor Peterlik, Nazim Haouchine, Lukáš Ručka, Stéphane Cotin
article
20th International Conference on Medical Image Computing and Computer Assisted Intervention, Sep 2017, Québec, Canada
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In computer-aided interventions, biomechanical models reconstructed from the pre-operative data are .....
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https://inria.hal.science/hal-01570811/file/miccai2017BCDA.pdf BibTex
titre
Robust Automatic Graph-based Skeletonization of Hepatic Vascular Trees
auteur
Rosalie Plantefève, Samuel Kadoury, An Tang, Igor Peterlik
article
CIIV STENT 2017, Sep 2017, Québec, Canada
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The topologies of vascular trees embedded inside soft tissues carry important information which can .....
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https://inria.hal.science/hal-01576771/file/cvii-stent-6.pdf BibTex
titre
Real-time Error Control for Surgical Simulation
auteur
Huu Phuoc Bui, Satyendra Tomar, Hadrien Courtecuisse, Stéphane Cotin, Stéphane P A Bordas
article
BIOMECHANICS AND COMPUTER ASSISTED SURGERY MEETS MEDICAL REALITY, Aug 2017, Lille, France
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Real-time simulations are becoming increasingly common for various applications, from geometric desi .....
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https://hal.science/hal-01571194/file/euromech595_2017_Bui_et_al.pdf BibTex
titre
Using Physical Modeling and RGB-D Registration for Contact Force Sensing on Deformable Objects
auteur
Antoine Petit, Fanny Ficuciello, Giuseppe Andrea Fontanelli, Luigi Villani, Bruno Siciliano
article
ICINCO 2017 - 14th International Conference on Informatics in Control, Automation and Robotics, IEEE, Jul 2017, Madrid, Spain. pp.24-33, ⟨10.5220/0006415900240033⟩
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In this paper we propose a method to estimate the force applied to a manipulated deformable object b .....
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BibTex
titre
Template-based Monocular 3D Recovery of Elastic Shapes using Lagrangian Multipliers
auteur
Nazim Haouchine, Stéphane Cotin
article
Computer Vision and Pattern Recognition (CVPR), Jul 2017, Honolulu, Hawai, United States
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We present in this paper an efficient template-based method for 3D recovery of elastic shapes from a .....
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https://inria.hal.science/hal-01524609/file/CVPR%202017%20-%20Template-based%20Monocular%203D%20Recovery%20of%20Elastic%20Shapes%20using%20Lagrangian%20Multipliers.pdf BibTex
titre
Augmented 3D Catheter Navigation using Constrained Shape from Template
auteur
Raffaella Trivisonne, Erwan Kerrien, Stéphane Cotin
article
Hamlyn Symposium, Jun 2017, London, United Kingdom
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In order to overcome the lack of depth perception in fluoroscopic images of endovascolar procedures, .....
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https://inria.hal.science/hal-01545693/file/HSMR17_paper_58.pdf BibTex
titre
Model-Based Generation of Synthetic 3D Time-Lapse Sequences of Motile Cells with Growing Filopodia
auteur
Dmitry V Sorokin, Igor Peterlik, Vladimír V Ulman, David Svoboda, Martin Maška
article
International Symposium on Biomedical Imaging, Apr 2017, Melbourne, Australia
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The existence of benchmark datasets is essential to objectively evaluate various image analysis meth .....
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https://inria.hal.science/hal-01445488/file/2017.ISBI.filapodiaSimu.pdf BibTex
titre
Fast reconstruction of image deformation field using radial basis function
auteur
Lukáš Ručka, Igor Peterlík
article
ISBI2017 - International Symposium on Biomedical Imaging, Apr 2017, Melbourne, Australia
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Fast and accurate registration of image data is a key component of computer-aided medical image anal .....
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https://inria.hal.science/hal-01445483/file/isbi-rbf.pdf BibTex
titre
Face-based Smoothed Finite Element Method for Real-time Simulation of soft tissue
auteur
Andrea Mendizabal, Rémi Bessard Duparc, Huu Phuoc Bui, Christoph J Paulus, Igor Peterlik, Stéphane Cotin
article
SPIE Medical Imaging, Feb 2017, Orlando, United States
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In soft tissue surgery, a tumor and other anatomical structures are usually located using the preope .....
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https://inria.hal.science/hal-01444595/file/SPIE2017.pdf BibTex

Poster communications

titre
Deformed Reality: Proof of concept and preliminary results
auteur
Nazim Haouchine, Antoine Petit, Frederick Roy, Stéphane Cotin
article
ISMAR 2017 - 16th IEEE International Symposium on Mixed and Augmented Reality, Oct 2017, Nantes, France. 2017
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We introduce " Deformed Reality " , a new paradigm to interactively manipulate objects in a scene in .....
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https://inria.hal.science/hal-01636772/file/poster-deformed-reality.pdf BibTex

Theses

titre
Topological Changes in Simulations of Deformable Objects
auteur
Christoph Joachim Paulus
article
Modeling and Simulation. University of Strasbourg, 2017. English. ⟨NNT : ⟩
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Virtual cutting of deformable objects is at the core of many applications in interactive simulation .....
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https://inria.hal.science/tel-01516170/file/PhD%20Thesis%20Christoph%20Joachim%20PAULUS%202017.pdf BibTex