Journal articles
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- FBG-Driven simulation for virtual augmentation of fluoroscopic images during endovascular interventions
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- Valentina Scarponi, Juan Verde, Nazim Haouchine, Michel Duprez, Florent Nageotte, Stéphane Cotin
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- Healthcare Technology Letters, 2024, ⟨10.1049/htl2.12108⟩
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- Endovascular interventions are procedures designed to diagnose and treat vascular diseases, using ca .....
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- Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome
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- Niccolò Carlino, Aitor Blanco-Míguez, Michal Punčochář, Claudia Mengoni, Federica Pinto, Alessia Tatti, Paolo Manghi, Federica Armanini, Michele Avagliano, Coral Barcenilla, Samuel Breselge, Raul Cabrera-Rubio, Inés Calvete-Torre, Mairéad Coakley, José Cobo-Díaz, Francesca de Filippis, Hrituraj Dey, John Leech, Eline Klaassens, Stephen Knobloch, Dominic O’neil, Narciso Quijada, Carlos Sabater, Sigurlaug Skírnisdóttir, Vincenzo Valentino, Liam Walsh, Avelino Alvarez-Ordóñez, Pablo Alvarez, Livio Antonielli, Elke Arendt, Federica Armanini, Aurelie Aubry, Jacob Baelum, Coral Barcenilla, Alejandro Belanche, Yaiza Benavent-Gil, Tony Blake, Aitor Blanco-Míguez, Radhika Bongoni, Mickael Boyer, Fiona Brennan, Samuel Breselge, Helgi Briem, Derek Butler, Inés Calvete-Torre, Omar Cristobal Carballo, Mireille Cardinal, Niccolò Carlino, Christian Chervaux, Christine Chopin, Natallia Clotaire, Mairead Coakley, José Francisco Cobo-Díaz, Jim Codd, Stephen Conroy, Karla Fabiola Corral-Jara, Karla-Fabiola Corral-Jara, Paul Cotter, Gerard Coyne, Gerard Coyne, Chris Creevey, Patricia Cuevas, Brendan Curran, Susana Delgado, Liesbeth Derde, Muriel Derrien, Danilo Ercolini, Ruth Gomez Exposito, María Mercedes López Fernández, Francesca de Filippis, Daniel Fordham, Hubert Galy, Asimenia Gavriilidou, Oddur Gunnarsson, Buck Hanson, Gerben Hermes, Rongcai Huang, Sharon Huws, Israel Ikoyi, Alice Jaeger, Ian Jeffery, Marc Jérôme, Pierre-Alexandre Juan, David Kenny, Annelies Kers, Karim-Franck Khinouche, Stuart Kirwan, Eline Klaassens, Stephen Knobloch, Kristinn Kolbeinsson, Laetitia Kolypczuk, Tanja Kostic, Fabio Ledda, John Leech, Doerte Lehmann, Françoise Leroi, Eva Lewis, Johanna Ley, Eva Lucic, Kieran Lynch, Sabrina Mace, Iain Maclaren-Lee, Lisa Mahler de Sanchez, Juergen Marchart, Abelardo Margolles, Viggó Thór Marteinsson, Giulia Masetti, Fiona Mcgovern, Noirin Mchugh, Steven Mcloughlin, Dara Meehan, Lars Mølbak, Thomas Monin, Javier Moreno, Diego Morgavi, Steven Morrison, Steffen Müench, Ana Rute Ramos Neves, Emma Neylon, Laura Nyhan, Rhona O’kelly, Dominic O’neil, Paul O’toole, Abimael Ortiz-Chura, Juan Manuel Palma, Edoardo Pasolli, Delphine Passerini, Milica Pastar, Federica Pinto, Walter Pirovano, Olga Plans, Marion Policht, Aurel Pop, Bianca Pop, Milka Popova, Miguel Prieto, Narciso Quijada, Antje Reiss, Pedro Romero, Patricia Ruas-Madiedo, Francesco Rubino, Raul Cabrera Rubio, Lorena Ruiz, Angela Ryan, Clodagh Ryan, Carlos Sabater, Aylin Sahin, Cecile Salaun, Fernanda Godoy Santos, Carolin Schneider, Nicola Segata, Evelyne Selberherr, Angela Sessitsch, Sigurlaug Skírnisdóttir, Hauke Smidt, Paul Smith, Markus Sprenger-Haussels, Ilma Tapio, Julien Tap, Vincenzo Valentino, Martin Wagner, Aaron Walsh, Liam Walsh, Sinead Waters, Spike Willcocks, David Yáñez-Ruiz, Tianhai Yan, Min Yap, Emanuele Zannini, Véronique Zuliani, Avelino Alvarez-Ordóñez, Francesco Asnicar, Gloria Fackelmann, Vitor Heidrich, Abelardo Margolles, Viggó Thór Marteinsson, Omar Rota Stabelli, Martin Wagner, Danilo Ercolini, Paul Cotter, Nicola Segata, Edoardo Pasolli
- article
- Cell, 2024, 187 (20), pp.5775-5795.e15. ⟨10.1016/j.cell.2024.07.039⟩
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- titre
- A Zero-Shot Reinforcement Learning Strategy for Autonomous Guidewire Navigation
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- Valentina Scarponi, Michel Duprez, Florent Nageotte, Stéphane Cotin
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- International Journal of Computer Assisted Radiology and Surgery, 2024, 19, pp.1185-1192. ⟨10.1007/s11548-024-03092-4⟩
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- Purpose: The treatment of cardiovascular diseases requires complex and challenging navigation of a g .....
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- CNN-based real-time 2D-3D deformable registration from a single X-ray projection
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- Francois Lecomte, Jean-Louis Dillenseger, Stéphane Cotin
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- Journal of Clinical Medicine, 2024, 11 (7), pp.1845. ⟨10.48550/arXiv.2212.07692⟩
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- Purpose: The purpose of this paper is to present a method for realtime 2D-3D non-rigid registration .....
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- Diversity-induced trivialization and resilience of neural dynamics
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- Axel Hutt, Daniel Trotter, Aref Pariz, Taufik A Valiante, Jérémie Lefebvre
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- Chaos: An Interdisciplinary Journal of Nonlinear Science, 2024, 34 (1), ⟨10.1063/5.0165773⟩
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- Heterogeneity is omnipresent in living systems and biophysical diversity enriches the systems’ dyn .....
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- Predicting primate tongue morphology based on geometrical skull matching. A first step towards an application on fossil hominins
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- Pablo Alvarez, Marouane El Mouss, Maxime Calka, Anca Belme, Gilles Berillon, Pauline Brige, Yohan Payan, Pascal Perrier, Amélie Vialet
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- PLoS Computational Biology, 2024, 20 (1), pp.e1011808. ⟨10.1371/journal.pcbi.1011808⟩
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- As part of a long-term research project aiming at generating a biomechanical model of a fossil human .....
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- Organ registration from partial surface data in augmented surgery from an optimal control perspective
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- Stéphane Cotin, Guillaume Mestdagh, Yannick Privat
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- Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences, 2024, 480, pp.20230197. ⟨10.1098/rspa.2023.0197⟩
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- We address the problem of organ registration in augmented surgery, where the deformation of the pati .....
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- Modeling the impact of rainfall and temperature on sterile insect control strategies in a Tropical environment
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- Yves Dumont, Michel Duprez
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- Journal of Biological Systems, 2024, 32 (1), pp.311-347. ⟨10.1142/S0218339024500128⟩
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- The sterile insect technique (SIT) is a biological control technique that can be used either to elim .....
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Conference papers
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- titre
- Real-time Robotic Flexible Needle Insertion In Deformable Living Organs Using Isolated Objective Constraint
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- Thuc Long Ha, Julien Bert, Hadrien Courtecuisse
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- IEEE RSJ International Conference on Intelligent Robots and Systems - IROS 2024, Oct 2024, Abu Dhabi, United Arab Emirates. pp.10998-11003, ⟨10.1109/IROS58592.2024.10802810⟩
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This paper presents an innovative approach for executing robotic needle insertion within def .....
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- titre
- High Rate Mechanical Coupling of Interacting Objects in the Context of Needle Insertion Simulation With Haptic Feedback
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- Claire Martin, Christian Duriez, Hadrien Courtecuisse
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- International Conference on Intelligent Robots and Systems (IROS 2024), Oct 2024, Abu Dhabi, United Arab Emirates. ⟨10.1109/IROS58592.2024.10801450⟩
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- Needle-based procedures such as biopsies or radio-frequency ablation (RFA) of tumors are often consi .....
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- Autonomous Guidewire Navigation in Dynamic Environments
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- Valentina Scarponi, François Lecomte, Michel Duprez, Florent Nageotte, Stéphane Cotin
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- International Conference on Intelligent Robots and Systems, Oct 2024, Abu Dhabi, United Arab Emirates. pp.6931-6938, ⟨10.1109/IROS58592.2024.10801651⟩
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- Cardiovascular disease treatment involves the challenging task of navigating guidewires and catheter .....
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- Towards Real-time Intrahepatic Vessel Identification in Intraoperative Ultrasound-Guided Liver Surgery
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- Karl-Philippe Beaudet, Alexandros Karargyris, Sidaty El Hadramy, Stéphane Cotin, Jean-Paul Mazellier, Nicolas Padoy, Juan Verde
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- 27th International Conference MICCAI 2024, Oct 2024, Marrakech, Morocco. pp.649-659, ⟨10.1007/978-3-031-72089-5_61⟩
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- While laparoscopic liver resection is less prone to complications and maintains patient outcomes com .....
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- Towards realistic needle insertion training simulator using partitioned model order reduction
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- Félix Vanneste, Claire Martin, Olivier Goury, Hadrien Courtecuisse, Erik Pernod, Stéphane Cotin, Christian Duriez
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- MICCAI 2024 - International Conference on Medical Image Computing and Computer-Assisted Intervention, Oct 2024, Marrakech, Morocco. ⟨10.1007/978-3-031-72089-5_62⟩
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- Needle-based intervention is part of minimally invasive surgery and has the benefit of allowing the .....
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- titre
- FBG-Driven simulation for virtual augmentation of fluoroscopic images during endovascular interventions
- auteur
- Valentina Scarponi, Juan Verde, Nazim Haouchine, Michel Duprez, Florent Nageotte, Stéphane Cotin
- article
- Medical Imaging and Augmented Reality, Augmented Environments for Computer Assisted Interventions (AE-CAI), Computer Assisted and Robotic Endoscopy (CARE) and Context-Aware Operating Theaters (OR 2.0) - MICCAI 2024 workshop, Oct 2024, Marrackech, Morocco
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- Endovascular interventions are procedures designed to diagnose and treat vascular diseases, using ca .....
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- titre
- Beyond respiratory models: a physics-enhanced synthetic data generation method for 2D-3D deformable registration
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- Francois Lecomte, Pablo Alvarez, Stéphane Cotin, Jean-Louis Dillenseger
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- Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR) Workshops, Jun 2024, Seattle (USA), Washington, United States. pp.2413-2421
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- Deformable image registration is crucial in aligning medical images for various clinical application .....
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- titre
- Towards real-time vessel guided augmented reality for liver surgery
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- Sidaty El Hadramy, Juan Verde, Nicolas Padoy, Stéphane Cotin
- article
- IEEE International Symposium on Biomedical Imaging (ISBI 2024), May 2024, Athenes, Grece, Greece. ⟨10.1109/ISBI56570.2024.10635104⟩
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- This work presents a novel method for augmented reality in liver surgery. Leveraging advanced recons .....
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- titre
- Deformable Image Registration with Stochastically Regularized Biomechanical Equilibrium
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- Pablo Alvarez, Stéphane Cotin
- article
- IEEE 21th International Symposium on Biomedical Imaging, Apr 2024, Athens, Greece. pp.1-5, ⟨10.1109/ISBI56570.2024.10635231⟩
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- Numerous regularization methods for deformable image registration aim at enforcing smooth transforma .....
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Book sections
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- titre
- On “Synergetics” by Hermann Haken (1976)
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- Axel Hutt
- article
- Foundational Papers in Complexity Science, 2024
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- The text embeds the article "Synergetics" (1976) written by Hermann Haken into the literature and ex .....
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Patents
- titre
- FOCUSED ULTRASOUND SONICATION WITH MECHANICAL AND ELECTRONIC STEERING ALONG A COMPUTED TRAJECTORY
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- Adnan Saood, Vappou Jonathan, Nageotte Florent, Larrat Benoit
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- France, Patent n° : EP4445859A1. 2024
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- Computer-implemented method for controlling a device (1) intended to be used for opening a blood-bra .....
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Proceedings
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- titre
- HyperU-Mesh: Real-time deformation of soft-tissues across variable patient-specific parameters
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- Sidaty El Hadramy, Nicolas Padoy, Stéphane Cotin
- article
- Computational Biomechanics Workshop at MICCAI 2024, 2024
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- Physics-based Patient-Specific Biomechanical models (PSBMs), particularly those using finite element .....
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Theses
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- titre
- Enhancing Fluoroscopy-Guided Procedures with Neural Network-Based Deformable Organ Registration
- auteur
- François Lecomte
- article
- Computer Vision and Pattern Recognition [cs.CV]. Université de Strasbourg; Inria, 2024. English. ⟨NNT : ⟩
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- In fluoroscopy-guided interventions, the lack of contrast prevents direct visualization of essential .....
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- titre
- Towards Autonomous Endovascular Surgery: Development of Assistance Tools for Computer-Aided Interventions
- auteur
- Valentina Scarponi
- article
- Computer Science [cs]. Strasbourg University, 2024. English. ⟨NNT : ⟩
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- Cardiovascular diseases are one of the leading causes of death worldwide, with an incidence of 17.9 .....
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- titre
- Closed-loop neurostimulation for the treatment of schizophrenia
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- Thomas Wahl
- article
- Biophysics. Icube, 67000 Strasbourg, 2024. English. ⟨NNT : ⟩
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- Mental disorders, such as schizophrenia, are associated with abnormal brain rhythms, including reduc .....
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- titre
- Réalité augmentée et intelligence artificielle pour une chirurgie hépatique guidée par échographie intravascularie
- auteur
- Sidaty El Hadramy
- article
- Computer Science [cs]. Université de Strasbourg, 2024. English. ⟨NNT : 2024STRAD031⟩
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- This thesis presents a novel augmented reality (AR) system guided by intravascular ultrasound (IVUS) .....
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Preprints, Working Papers, ...
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- titre
- Gait Motion Classification for Neurodegenerative Diseases by Recurrence Structure Analysis
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- Gauthier Debes, Diwei Wang, Peter beim Graben, Frédéric Blanc, Candice Muller, Hyewon Seo, Axel Hutt
- article
- 2024
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- Objective: Gait analysis plays a significant role in clinical assessments to discriminate neurologic .....
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