titre

An empirical evaluation of functional alignment using inter-subject decoding

auteur

Thomas Bazeille, Elizabeth Dupre, Hugo Richard, Jean-Baptiste Poline, Bertrand Thirion

article

NeuroImage, 2021, 245, ⟨10.1016/j.neuroimage.2021.118683⟩

titre

From deep brain phenotyping to functional atlasing

auteur

Bertrand Thirion, Alexis Thual, Ana Luísa Pinho

article

Current Opinion in Behavioral Sciences, 2021, 40, pp.201-212. ⟨10.1016/j.cobeha.2021.05.004⟩

titre

Tissue outcome prediction in hyperacute ischemic stroke: Comparison of machine learning models

auteur

Joseph Benzakoun, Sylvain Charron, Guillaume Turc, Wagih Ben Hassen, Laurence Legrand, Grégoire Boulouis, Olivier Naggara, Jean-Claude Baron, Bertrand Thirion, Catherine Oppenheim

article

Journal of Cerebral Blood Flow and Metabolism, 2021, pp.0271678X2110243. ⟨10.1177/0271678X211024371⟩

titre

Extracting representations of cognition across neuroimaging studies improves brain decoding

auteur

Arthur Mensch, Julien Mairal, Bertrand Thirion, Gaël Varoquaux

article

PLoS Computational Biology, 2021, 17 (5), pp.e1008795:1-20. ⟨10.1371/journal.pcbi.1008795⟩

titre

Functional annotation of human cognitive states using deep graph convolution

auteur

Yu Zhang, Loïc Tetrel, Bertrand Thirion, Pierre Bellec

article

NeuroImage, 2021, 231, pp.117847. ⟨10.1016/j.neuroimage.2021.117847⟩

titre

Decoding with Confidence: Statistical Control on Decoder Maps

auteur

Jérôme-Alexis Chevalier, Tuan-Binh Nguyen, Joseph Salmon, Gaël Varoquaux, Bertrand Thirion

article

NeuroImage, 2021, pp.117921. ⟨10.1016/j.neuroimage.2021.117921⟩

titre

Brain topography beyond parcellations: local gradients of functional maps

auteur

Elvis Dohmatob, Hugo Richard, Ana Luísa Pinho, Bertrand Thirion

article

NeuroImage, 2021, pp.117706. ⟨10.1016/j.neuroimage.2020.117706⟩

titre

Population modeling with machine learning can enhance measures of mental health

auteur

Kamalaker Dadi, Gaël Varoquaux, Josselin Houenou, Danilo Bzdok, Bertrand Thirion, Denis Engemann

article

GigaScience, 2021, ⟨10.1101/2020.08.25.266536⟩

titre

Shared Independent Component Analysis for Multi-Subject Neuroimaging

auteur

Hugo Richard, Pierre Ablin, Bertrand Thirion, Alexandre Gramfort, Aapo Hyvärinen

article

35th Conference on Neural Information Processing Systems NeurIPS 2021, Dec 2021, Sydney (Virtual Conference), Australia

titre

Functional Magnetic Resonance Imaging data augmentation through conditional ICA

auteur

Badr Tajini, Hugo Richard, Bertrand Thirion

article

MICCAI 2021 - 24th International Conference on Medical Image Computing and Computer Assisted Intervention, Sep 2021, Strasbourg, France

titre

Subject‐specific segregation of functional territories based on deep phenotyping

auteur

Ana Luísa Pinho, Alexis Amadon, Murielle Fabre, Elvis Dohmatob, Isabelle Denghien, Juan Jesús Torres, Chantal Ginisty, Séverine Becuwe-Desmidt, Séverine Roger, Laurence Laurier, Véronique Joly-Testault, Gaëlle Médiouni-Cloarec, Christine Doublé, Bernadette Martins, Philippe Pinel, Evelyn Eger, Gaël Varoquaux, Christophe C Pallier, Stanislas Dehaene, Lucie Hertz‐pannier, Bertrand Thirion

article

Human Brain Mapping, 2020, ⟨10.1002/hbm.25189⟩

titre

Fine-grain atlases of functional modes for fMRI analysis

auteur

Kamalaker Dadi, Gaël Varoquaux, Antonia Machlouzarides-Shalit, Krzysztof J. Gorgolewski, Demian Wassermann, Bertrand Thirion, Arthur Mensch

article

NeuroImage, 2020, 221, pp.117126

titre

Variability in the analysis of a single neuroimaging dataset by many teams

auteur

Rotem Botvinik-Nezer, Felix Holzmeister, Colin F Camerer, Anna Dreber, Juergen Huber, Magnus Johannesson, Michael Kirchler, Roni Iwanir, Jeanette A Mumford, R. Alison Adcock, Paolo Avesani, Blazej M Baczkowski, Aahana Bajracharya, Leah Bakst, Sheryl Ball, Marco Barilari, Nadège Bault, Derek Beaton, Julia Beitner, Roland G Benoit, Ruud M.W.J. Berkers, Jamil P Bhanji, Bharat B Biswal, Sebastian Bobadilla-Suarez, Tiago Bortolini, Katherine L Bottenhorn, Alexander Bowring, Senne Braem, Hayley R Brooks, Emily G Brudner, Cristian B Calderon, Julia A Camilleri, Jaime J Castrellon, Luca Cecchetti, Edna C Cieslik, Zachary J Cole, Olivier Collignon, Robert W Cox, William A Cunningham, Stefan Czoschke, Kamalaker Dadi, Charles P Davis, Alberto De Luca, Mauricio R Delgado, Lysia Demetriou, Jeffrey B Dennison, Xin Di, Erin W Dickie, Ekaterina Dobryakova, Claire L Donnat, Juergen Dukart, Niall W Duncan, Joke Durnez, Amr Eed, Simon B. Eickhoff, Andrew Erhart, Laura Fontanesi, G. Matthew Fricke, Shiguang Fu, Adriana Galván, Remi Gau, Sarah Genon, Tristan Glatard, Enrico Glerean, Jelle J Goeman, Sergej A.E. Golowin, Carlos González-García, Krzysztof J Gorgolewski, Cheryl L Grady, Mikella A Green, João F Guassi Moreira, Olivia Guest, Shabnam Hakimi, J. Paul Hamilton, Roeland Hancock, Giacomo Handjaras, Bronson B Harry, Colin Hawco, Peer Herholz, Gabrielle Herman, Stephan Heunis, Felix Hoffstaedter, Jeremy Hogeveen, Susan Holmes, Chuan-Peng Hu, Scott A Huettel, Matthew E Hughes, Vittorio Iacovella, Alexandru D Iordan, Peder M Isager, Ayse I Isik, Andrew Jahn, Matthew R Johnson, Tom Johnstone, Michael J.E. Joseph, Anthony C Juliano, Joseph W Kable, Michalis Kassinopoulos, Cemal Koba, Xiang-Zhen Kong, Timothy R Koscik, Nuri Erkut Kucukboyaci, Brice A Kuhl, Sebastian Kupek, Angela R Laird, Claus Lamm, Robert Langner, Nina Lauharatanahirun, Hongmi Lee, Sangil Lee, Alexander Leemans, Andrea Leo, Elise Lesage, Flora Li, Monica Y.C. Li, Phui Cheng Lim, Evan N Lintz, Schuyler W Liphardt, Annabel B Losecaat Vermeer, Bradley C Love, Michael L Mack, Norberto Malpica, Theo Marins, Camille Maumet, Kelsey Mcdonald, Joseph T Mcguire, Helena Melero, Adriana S Méndez Leal, Benjamin Meyer, Kristin N Meyer, Glad Mihai, Georgios D. Mitsis, Jorge Moll, Dylan M Nielson, Gustav Nilsonne, Michael P Notter, Emanuele Olivetti, Adrian I Onicas, Paolo Papale, Kaustubh R Patil, Jonathan E Peelle, Alexandre Pérez, Doris Pischedda, Jean-Baptiste Poline, Yanina Prystauka, Shruti Ray, Patricia A Reuter-Lorenz, Richard C Reynolds, Emiliano Ricciardi, Jenny R Rieck, Anais M Rodriguez-Thompson, Anthony Romyn, Taylor Salo, Gregory R Samanez-Larkin, Emilio Sanz-Morales, Margaret L Schlichting, Douglas H Schultz, Qiang Shen, Margaret A Sheridan, Jennifer A Silvers, Kenny Skagerlund, Alec Smith, David V Smith, Peter Sokol-Hessner, Simon R Steinkamp, Sarah M Tashjian, Bertrand Thirion, John N Thorp, Gustav Tinghög, Loreen Tisdall, Steven H Tompson, Claudio Toro-Serey, Juan Jesus Torre Tresols, Leonardo Tozzi, Vuong Truong, Luca Turella, Anna E van ‘t Veer, Tom Verguts, Jean M Vettel, Sagana Vijayarajah, Khoi Vo, Matthew B Wall, Wouter D Weeda, Susanne Weis, David J White, David Wisniewski, Alba Xifra-Porxas, Emily A Yearling, Sangsuk Yoon, Rui Yuan, Kenneth S.L. Yuen, Lei Zhang, Xu Zhang, Joshua E Zosky, Thomas E. Nichols, Russell A Poldrack, Tom Schonberg

article

Nature, 2020, 582 (7810), pp.84-88. ⟨10.1038/s41586-020-2314-9⟩

titre

NeuroQuery, comprehensive meta-analysis of human brain mapping

auteur

Jérôme Dockès, Russell Poldrack, Romain Primet, Hande Gözükan, Tal Yarkoni, Fabian M Suchanek, Bertrand Thirion, Gaël Varoquaux

article

eLife, 2020

titre

Multi-Scale Network Regression for Brain-Phenotype Associations

auteur

Cedric Huchuan Xia, Zongming Ma, Zaixu Cui, Danilo Bzdok, Bertrand Thirion, Danielle Bassett, Theodore D Satterthwaite, Russell T Shinohara, Daniela M Witten

article

Human Brain Mapping, In press, ⟨10.1002/hbm.24982⟩

titre

Individual Brain Charting dataset extension, second release of high-resolution fMRI data for cognitive mapping

auteur

Ana Luísa Pinho, Alexis Amadon, Baptiste Gauthier, Nicolas Clairis, André Knops, Sarah Genon, Elvis Dohmatob, Juan Jesús Torre, Chantal Ginisty, Séverine Becuwe-Desmidt, Séverine Roger, Yann Lecomte, Valérie Berland, Laurence Laurier, Véronique Joly-Testault, Gaëlle Médiouni-Cloarec, Christine Doublé, Bernadette Martins, Eric Salmon, Manuela Piazza, David Melcher, Mathias Pessiglione, Virginie van Wassenhove, Evelyn Eger, Gaël Varoquaux, Stanislas Dehaene, Lucie Hertz-Pannier, Bertrand Thirion

article

Scientific Data , 2020, ⟨10.1038/s41597-020-00670-4⟩

titre

Statistical control for spatio-temporal MEG/EEG source imaging with desparsified multi-task Lasso

auteur

Jérôme-Alexis Chevalier, Alexandre Gramfort, Joseph Salmon, Bertrand Thirion

article

NeurIPS 2020 - 34h Conference on Neural Information Processing Systems, Dec 2020, Vancouver /Virtual, Canada

titre

Modeling Shared Responses in Neuroimaging Studies through MultiView ICA

auteur

Hugo Richard, Luigi Gresele, Aapo Hyvärinen, Bertrand Thirion, Alexandre Gramfort, Pierre Ablin

article

NeurIPS 2020 - Advances in Neural Information Processing Systems, Dec 2020, Vancouver, Canada. pp.19149--19162

titre

Multivariate analysis is sufficient for lesion-behaviour mapping

auteur

Lucas Martin, Julie Josse, Bertrand Thirion

article

MICCAI BrainLes 2020 workshop, Oct 2020, Lima, Peru

titre

Aggregation of Multiple Knockoffs

auteur

Tuan-Binh Nguyen, Jérôme-Alexis Chevalier, Bertrand Thirion, Sylvain Arlot

article

ICML 2020 - 37th International Conference on Machine Learning, Jul 2020, Vienne / Virtual, Austria

titre

Brain-based ranking of cognitive domains to predict schizophrenia

auteur

Teresa M Karrer, Danielle S. Bassett, Birgit Derntl, Oliver Gruber, Andre Aleman, Renaud Jardri, Angela R Laird, Peter Fox, Simon B. Eickhoff, Olivier Grisel, Gaël Varoquaux, Bertrand Thirion, Danilo Bzdok

article

Human Brain Mapping, 2019, 40, pp.4487-4507. ⟨10.1002/hbm.24716⟩

titre

SmartPulse, a machine learning approach for calibration-free dynamic RF shimming: preliminary study in a clinical environment

auteur

Raphael Tomi-Tricot, Vincent Gras, Bertrand Thirion, Franck Mauconduit, Nicolas Boulant, Hamza Cherkaoui, Pierre Zerbib, Alexandre Vignaud, Alain Luciani, Alexis Amadon

article

Magnetic Resonance in Medicine, 2019, 82, pp.2016-2031. ⟨10.1002/mrm.27870⟩

titre

Benchmarking functional connectome-based predictive models for resting-state fMRI

auteur

Kamalaker Dadi, Mehdi Rahim, Alexandre Abraham, Darya Chyzhyk, Michael Milham, Bertrand Thirion, Gaël Varoquaux

article

NeuroImage, 2019, 192, pp.115-134. ⟨10.1016/j.neuroimage.2019.02.062⟩

titre

The functional database of the ARCHI project: Potential and perspectives

auteur

Philippe Pinel, Baudouin Forgeot d'Arc, Stanislas Dehaene, Thomas Bourgeron, Bertrand Thirion, Denis Le Bihan, Cyril Poupon

article

NeuroImage, 2019, 197, pp.527-543. ⟨10.1016/j.neuroimage.2019.04.056⟩

titre

Population shrinkage of covariance (PoSCE) for better individual brain functional-connectivity estimation

auteur

Mehdi Rahim, Bertrand Thirion, Gaël Varoquaux

article

Medical Image Analysis, 2019, ⟨10.1016/j.media.2019.03.001⟩

titre

Mapping the asynchrony of cortical maturation in the infant brain: a MRI multi-parametric clustering approach

auteur

Jessica Lebenberg, Jean-François Mangin, Bertrand Thirion, Cyril Poupon, Lucie Hertz-Pannier, François Leroy, Parvaneh Adibpour, Ghislaine Dehaene-Lambertz, Jessica Dubois

article

NeuroImage, 2019, 185, pp.641-653. ⟨10.1016/j.neuroimage.2018.07.022⟩

titre

Feature Grouping as a Stochastic Regularizer for High-Dimensional Structured Data

auteur

Sergül Aydöre, Bertrand Thirion, Gaël Varoquaux

article

NeurIPS 2019 - 33th Annual Conference on Neural Information Processing Systems, Dec 2019, Vancouver, Canada

titre

Group level MEG/EEG source imaging via optimal transport: minimum Wasserstein estimates

auteur

Hicham Janati, Thomas Bazeille, Bertrand Thirion, Marco Cuturi, Alexandre Gramfort

article

IPMI 2019 - 26th international conference on Information Processing in Medical Imaging, Jun 2019, Hong Kong, Hong Kong SAR China

titre

Local Optimal Transport for Functional Brain Template Estimation

auteur

Thomas Bazeille, Hugo Richard, Hicham Janati, Bertrand Thirion

article

IPMI 2019 - 26th International Conference on Information Processing in Medical Imaging, Jun 2019, Hong Kong, China. ⟨10.1007/978-3-030-20351-1_18⟩

titre

ECKO: Ensemble of Clustered Knockoffs for robust multivariate inference on MRI data

auteur

Tuan-Binh Nguyen, Jérôme-Alexis Chevalier, Bertrand Thirion

article

IPMI 2019 - International Conference on Information Processing in Medical Imaging, Jun 2019, Hong Kong, Hong Kong SAR China. ⟨10.1007/978-3-030-20351-1_35⟩

titre

Atlases of cognition with large-scale human brain mapping

auteur

Gaël Varoquaux, Yannick Schwartz, Russell A Poldrack, Baptiste Gauthier, Danilo Bzdok, Jean-Baptiste Poline, Bertrand Thirion

article

PLoS Computational Biology, 2018, 14 (11), pp.e1006565. ⟨10.1371/journal.pcbi.1006565⟩

titre

Subspecialization within default mode nodes characterized in 10,000 UK Biobank participants

auteur

Julius M Kernbach, B T Thomas Yeo, Jonathan Smallwood, Daniel Margulies, Michel Thiebaut de Schotten, Henrik Walter, Mert Sabuncu, Avram J Holmes, Alexandre Gramfort, Gaël Varoquaux, Bertrand Thirion, Danilo Bzdok

article

Proceedings of the National Academy of Sciences of the United States of America, 2018, ⟨10.1073/pnas.1804876115⟩

titre

Shared Endo-phenotypes of Default Mode Dysfunction in Attention Deficit/Hyperactivity Disorder and Autism Spectrum Disorder

auteur

Julius M Kernbach, Theodore D Satterthwaite, Danielle S. Bassett, Jonathan Smallwood, Daniel Margulies, Sarah Krall, Philip Shaw, Gaël Varoquaux, Bertrand Thirion, Kerstin Konrad, Danilo Bzdok

article

Translational Psychiatry, 2018, 8 (1), pp.133. ⟨10.1038/s41398-018-0179-6⟩

titre

Individual Brain Charting, a high-resolution fMRI dataset for cognitive mapping

auteur

Ana Luísa Pinho, Alexis Amadon, Torsten Ruest, Murielle Fabre, Elvis Dohmatob, Isabelle Denghien, Chantal Ginisty, Séverine Becuwe-Desmidt, Séverine Roger, Laurence Laurier, Véronique Joly-Testault, Gaëlle Médiouni-Cloarec, Christine Doublé, Bernadette Martins, Philippe Pinel, Evelyn Eger, Gael Varoquaux, Christophe Pallier, Stanislas Dehaene, Lucie Hertz-Pannier, Bertrand Thirion

article

Scientific Data , 2018, 5, pp.180105. ⟨10.1038/sdata.2018.105⟩

titre

Inter-subject registration of functional images: do we need anatomical images ?

auteur

Elvis Dohmatob, Gaël Varoquaux, Bertrand Thirion

article

Frontiers in Neuroscience, In press

titre

Different shades of default mode disturbance in schizophrenia: Subnodal covariance estimation in structure and function

auteur

Jeremy Lefort-Besnard, Danielle S Bassett, Jonathan Smallwood, Daniel S. Margulies, Birgit Derntl, Oliver Gruber, Andre Aleman, Renaud Jardri, Gaël Varoquaux, Bertrand Thirion, Simon B. Eickhoff, Danilo Bzdok

article

Human Brain Mapping, 2018, pp.1-52

titre

Stochastic Subsampling for Factorizing Huge Matrices

auteur

Arthur Mensch, Julien Mairal, Bertrand Thirion, Gaël Varoquaux

article

IEEE Transactions on Signal Processing, 2018, 66 (1), pp.113-128. ⟨10.1109/TSP.2017.2752697⟩

titre

Atlases of cognition with large-scale brain mapping

auteur

Gaël Varoquaux, Yannick Schwartz, Russell Poldrack, Baptiste Gauthier, Danilo Bzdok, Jean-Baptiste Poline, Bertrand Thirion

article

PLoS Computational Biology, In press

titre

Patterns of Schizophrenia Symptoms: Hidden Structure in the PANSS Questionnaire

auteur

Jeremy Lefort-Besnard, Gaël Varoquaux, Birgit Derntl, Oliver Gruber, Andre Aleman, Renaud Jardri, Iris Sommer, Bertrand Thirion, Danilo Bzdok

article

Translational Psychiatry, In press, ⟨10.1038/s41398-018-0294-4⟩

titre

Text to brain: predicting the spatial distribution of neuroimaging observations from text reports

auteur

Jérôme Dockès, Demian Wassermann, Russell Poldrack, Fabian M. Suchanek, Bertrand Thirion, Gaël Varoquaux

article

MICCAI 2018 - 21st International Conference on Medical Image Computing and Computer Assisted Intervention, Sep 2018, Granada, Spain. pp.1-18

titre

Optimizing deep video representation to match brain activity

auteur

Hugo Richard, Ana Pinho, Bertrand Thirion, Guillaume Charpiat

article

CCN 2018 - Conference on Cognitive Computational Neuroscience, Sep 2018, Philadelphia, United States

titre

A standardised representation for non-parametric fMRI results

auteur

Camille Maumet, Guillaume Flandin, Martin Perez-Guevara, Jean-Baptiste Poline, Justin Rajendra, Richard Reynolds, Bertrand Thirion, Thomas E. Nichols

article

OHBM 2018 - Annual meeting of the Organization of Human Brain Mapping, Jun 2018, Singapore, Singapore. pp.1-4

titre

Controlling a confound in predictive models with a test set minimizing its effect

auteur

Darya Chyzhyk, Gaël Varoquaux, Bertrand Thirion, Michael Milham

article

PRNI 2018 - 8th International Workshop on Pattern Recognition in Neuroimaging, Jun 2018, Singapore, Singapore. pp.1-4

titre

Statistical Inference with Ensemble of Clustered Desparsified Lasso

auteur

Jérôme-Alexis Chevalier, Joseph Salmon, Bertrand Thirion

article

MICCAI, 2018, Grenade, Spain

titre

Decoding fMRI activity in the time domain improves classification performance

auteur

João Loula, Gaël Varoquaux, Bertrand Thirion

article

NeuroImage, 2017, ⟨10.1016/j.neuroimage.2017.08.018⟩

titre

Joint prediction of multiple scores captures better individual traits from brain images

auteur

Mehdi Rahim, Bertrand Thirion, Danilo Bzdok, Irène Buvat, Gaël Varoquaux

article

NeuroImage, 2017, ⟨10.1016/j.neuroimage.2017.06.072⟩

titre

Best Practices in Data Analysis and Sharing in Neuroimaging using MRI

auteur

Thomas E Nichols​, Samir Das​, Simon B. Eickhoff​ 3​, Alan C Evans​, Tristan Glatard​, Michael Hanke​, Nikolaus Kriegeskorte​, Michael P Milham​, Russell A Poldrack​, Jean-Baptiste P Poline​, Erika P Proal​, Bertrand Thirion​, David van Essen, Tonya White​, B.T. Thomas Yeo​

article

Nature Neuroscience, 2017, 20, pp.299-303. ⟨10.1038/nn.4500⟩

titre

Distinct alterations in Parkinson's Medication-state and Disease-state Connectivity Running Title: PD altered connectivity

auteur

Bernard Ng, Gaël Varoquaux, Jean Baptiste Poline, Bertrand Thirion, Michael D. Greicius, Kathleen L Poston

article

Neuroimage-Clinical, 2017

titre

FReM – scalable and stable decoding with fast regularized ensemble of models

auteur

Andrés A Hoyos-Idrobo, Gaël Varoquaux, Yannick Schwartz, Bertrand Thirion

article

NeuroImage, 2017, pp.1-16. ⟨10.1016/j.neuroimage.2017.10.005⟩

titre

Learning Neural Representations of Human Cognition across Many fMRI Studies

auteur

Arthur Mensch, Julien Mairal, Danilo Bzdok, Bertrand Thirion, Gaël Varoquaux

article

Neural Information Processing Systems, Dec 2017, Long Beach, United States

titre

Label scarcity in biomedicine: Data-rich latent factor discovery enhances phenotype prediction

auteur

Marc-Andre Schulz, Gaël Varoquaux, Alexandre Gramfort, Bertrand Thirion, Danilo Bzdok

article

Neural Information Processing Systems, Machine Learning in Health Workshop, Dec 2017, Long Beach, United States

titre

Population-shrinkage of covariance to estimate better brain functional connectivity

auteur

Mehdi Rahim, Bertrand Thirion, Gaël Varoquaux

article

Medical Image Computing and Computer Assisted Interventions, Sep 2017, Quebec city, Canada

titre

Hierarchical Region-Network Sparsity for High-Dimensional Inference in Brain Imaging

auteur

Danilo Bzdok, Michael Eickenberg, Gaël Varoquaux, Bertrand Thirion

article

International conference on Information Processing in Medical Imaging (IPMI) 2017, Jun 2017, Boone, North Carolina, United States

titre

Multi-output predictions from neuroimaging: assessing reduced-rank linear models

auteur

Mehdi Rahim, Bertrand Thirion, Gaël Varoquaux

article

PRNI 2017 - The 7th International Workshop on Pattern Recognition in Neuroimaging, Jun 2017, Toronto, Canada. pp.1 - 4, ⟨10.1109/PRNI.2017.7981504⟩

titre

Towards a Faster Randomized Parcellation Based Inference

auteur

Andrés Hoyos-Idrobo, Gaël Varoquaux, Bertrand Thirion

article

PRNI 2017 - 7th International Workshop on Pattern Recognition in NeuroImaging, Jun 2017, Toronto, Canada

titre

Deriving reproducible biomarkers from multi-site resting-state data: An Autism-based example

auteur

Alexandre Abraham, Michael Milham, Adriana Di Martino, R. Cameron Craddock, Dimitris Samaras, Bertrand Thirion, Gaël Varoquaux

article

NeuroImage, 2016, ⟨10.1016/j.neuroimage.2016.10.045⟩

titre

Transmodal Learning of Functional Networks for Alzheimer's Disease Prediction

auteur

Mehdi Rahim, Bertrand Thirion, Claude Comtat, Gaël Varoquaux

article

IEEE Journal of Selected Topics in Signal Processing, 2016, 10 (7), pp.1204 - 1213. ⟨10.1109/JSTSP.2016.2600400⟩

titre

Recursive nearest agglomeration (ReNA): fast clustering for approximation of structured signals

auteur

Andrés Hoyos-Idrobo, Gaël Varoquaux, Jonas Kahn, Bertrand Thirion

article

IEEE Transactions on Pattern Analysis and Machine Intelligence, In press, XX, ⟨10.1109/TPAMI.2018.2815524⟩

titre

Neuroimaging Research: From Null-Hypothesis Falsification to Out-of-sample Generalization

auteur

Danilo Bzdok, Gaël Varoquaux, Bertrand Thirion

article

Educational and Psychological Measurement, 2016

titre

Formal Models of the Network Co-occurrence Underlying Mental Operations

auteur

Danilo Bzdok, Gaël Varoquaux, Olivier Grisel, Michael Eickenberg, Cyril Poupon, Bertrand Thirion

article

PLoS Computational Biology, 2016, ⟨10.1371/journal.pcbi.1004994⟩

titre

Exploring the early organization and maturation of linguistic pathways in the human infant brain

auteur

Jessica Dubois, Cyril Poupon, Bertrand Thirion, Hina Simonnet, Sofya Kulikova, François Leroy, Lucie Hertz-Pannier, Ghislaine Dehaene-Lambertz

article

Cerebral Cortex, 2016, 26 (5), pp.2283-2298. ⟨10.1093/cercor/bhv082⟩

titre

Connectivity-Based Parcellation: Critique and Implications

auteur

Simon B. Eickhoff, Bertrand Thirion, Gaël Varoquaux, Danilo Bzdok

article

Human Brain Mapping, 2016, pp.22. ⟨10.1002/hbm.22933⟩

titre

Seeing it all: Convolutional network layers map the function of the human visual system

auteur

Michael Eickenberg, Alexandre Gramfort, Gaël Varoquaux, Bertrand Thirion

article

NeuroImage, 2016, ⟨10.1016/j.neuroimage.2016.10.001⟩

titre

Subsampled online matrix factorization with convergence guarantees

auteur

Arthur Mensch, Julien Mairal, Gaël Varoquaux, Bertrand Thirion

article

NIPS Workshop on Optimization for Machine Learning, Dec 2016, Barcelone, Spain

titre

Learning brain regions via large-scale online structured sparse dictionary-learning

auteur

Elvis Dohmatob, Arthur Mensch, Gaël Varoquaux, Bertrand Thirion

article

Neural Information Processing Systems (NIPS), Dec 2016, Barcelona, Spain

titre

Social-sparsity brain decoders: faster spatial sparsity

auteur

Gaël Varoquaux, Matthieu Kowalski, Bertrand Thirion

article

Pattern Recognition in NeuroImaging, Jun 2016, Trento, Italy

titre

Fast brain decoding with random sampling and random projections

auteur

Andrés Hoyos-Idrobo, Gaël Varoquaux, Bertrand Thirion

article

PRNI 2016: the 6th International Workshop on Pattern Recognition in Neuroimaging, Jun 2016, Trento, Italy

titre

Comparing functional connectivity based predictive models across datasets

auteur

Kamalaker Dadi, Alexandre Abraham, Mehdi Rahim, Bertrand Thirion, Gaël Varoquaux

article

PRNI 2016: 6th International Workshop on Pattern Recognition in Neuroimaging, Jun 2016, Trento, Italy

titre

Dictionary Learning for Massive Matrix Factorization

auteur

Arthur Mensch, Julien Mairal, Bertrand Thirion, Gaël Varoquaux

article

International Conference on Machine Learning, Jun 2016, New York, United States. pp.1737-1746

titre

Compressed Online Dictionary Learning for Fast Resting-State fMRI Decomposition

auteur

Arthur Mensch, Gaël Varoquaux, Bertrand Thirion

article

International Symposium on Biomedical Imaging, IEEE, Apr 2016, Prague, Czech Republic. pp.1282-1285, ⟨10.1109/ISBI.2016.7493501⟩

titre

Local Q-Linear Convergence and Finite-time Active Set Identification of ADMM on a Class of Penalized Regression Problems

auteur

Elvis Dohmatob, Michael Eickenberg, Bertrand Thirion, Gaël Varoquaux

article

ICASSP, International Conference on Acoustics, Speach, and Signal Processing, Mar 2016, http://icassp2016.org/default.asp, China

titre

Data-driven HRF estimation for encoding and decoding models

auteur

Fabian Pedregosa, Michael Eickenberg, Philippe Ciuciu, Bertrand Thirion, Alexandre Gramfort

article

NeuroImage, 2015, pp.209--220. ⟨10.1016/j.neuroimage.2014.09.060⟩

titre

Transport on Riemannian Manifold for Connectivity-based Brain Decoding

auteur

Bernard Ng, Gaël Varoquaux, Jean-Baptiste Poline, Michael D Greicius, Bertrand Thirion

article

IEEE Transactions on Medical Imaging, 2015, PP (99), pp.9. ⟨10.1109/TMI.2015.2463723⟩

titre

Semi-Supervised Factored Logistic Regression for High-Dimensional Neuroimaging Data

auteur

Danilo Bzdok, Michael Eickenberg, Olivier Grisel, Bertrand Thirion, Gaël Varoquaux

article

NIPS'15: 28th International Conference on Neural Information Processing Systems, Dec 2015, Montreal, Canada

titre

Integrating Multimodal Priors in Predictive Models for the Functional Characterization of Alzheimer's Disease

auteur

Mehdi Rahim, Bertrand Thirion, Alexandre Abraham, Michael Eickenberg, Elvis Dohmatob, Claude Comtat, Gael Varoquaux

article

Medical Image Computing and Computer Assisted Intervention, Oct 2015, Munich, Germany. ⟨10.1007/978-3-319-24553-9_26⟩

titre

Total Variation meets Sparsity: statistical learning with segmenting penalties

auteur

Michael Eickenberg, Elvis Dohmatob, Bertrand Thirion, Gaël Varoquaux

article

Medical Image Computing and Computer Aided Intervention (MICCAI), Oct 2015, München, Germany

titre

Correlations of correlations are not reliable statistics: implications for multivariate pattern analysis.

auteur

Bertrand Thirion, Fabian Pedregosa, Michael Eickenberg, Gaël Varoquaux

article

ICML Workshop on Statistics, Machine Learning and Neuroscience (Stamlins 2015), Bertrand Thirion, Lars Kai Hansen, Sanmi Koyejo, Jul 2015, Lille, France

titre

Fast clustering for scalable statistical analysis on structured images

auteur

Bertrand Thirion, Andrés Hoyos-Idrobo, Jonas Kahn, Gaël Varoquaux

article

ICML Workshop on Statistics, Machine Learning and Neuroscience (Stamlins 2015), Bertrand Thirion, Lars Kai Hansen, Sanmi Koyejo, Jul 2015, Lille, France

titre

Bootstrapped Permutation Test for Multiresponse Inference on Brain Behavior Associations

auteur

Bernard Ng, Jean Baptiste Poline, Bertrand Thirion, Michael D. Greicius

article

Information Processing in Medical Imaging 2015, Sebastien Ourselin, University College London, UK; Daniel Alexander, University College London, UK; Carl-Fredrik Westin, Harvard University, USA, Jun 2015, Sabhal Mor Ostaig, Isle of Skye, United Kingdom. pp.12

titre

Improving sparse recovery on structured images with bagged clustering

auteur

Andrés Hoyos-Idrobo, Yannick Schwartz, Gaël Varoquaux, Bertrand Thirion

article

International Workshop On Pattern Recognition In Neuroimaging (PRNI), 2015, Jun 2015, Palo alto, United States

titre

Speeding-up model-selection in GraphNet via early-stopping and univariate feature-screening

auteur

Elvis Dohmatob, Michael Eickenberg, Bertrand Thirion, Gaël Varoquaux

article

PRNI, Jun 2015, Stanford, United States

titre

Identification of Mood-Relevant Brain Connections Using a Continuous, Subject-Driven Rumination Paradigm.

auteur

Anna-Clare Milazzo, Bernard Ng, Heidi Jiang, William Shirer, Gael Varoquaux, Jean-Baptiste Poline, Bertrand Thirion, Michael D Greicius

article

Cerebral Cortex, 2014, pp.12

titre

Graph-based inter-subject pattern analysis of fMRI data

auteur

Sylvain Takerkart, Guillaume Auzias, Bertrand Thirion, Liva Ralaivola

article

PLoS ONE, 2014, 10.1371/journal.pone.0104586. ⟨10.1371/journal.pone.0104586⟩

titre

Interoperable atlases of the human brain

auteur

K Amunts, M.J. Hawrylycz, David C. van Essen, Jd van Horn., N Harel, Jean-Baptiste Poline, F de Martino, J. G. Bjaalie, Ghislaine Dehaene-Lambertz, Stanislas Dehaene, P Valdes-Sosa, Bertrand Thirion, K Zilles, S.L. Hill, M.B. Abrams, P.A. Tass, W Vanduffel, Alan Evans, S.B. Eickhoff

article

NeuroImage, 2014, 99 (1), pp.8. ⟨10.1016/j.neuroimage.2014.06.010⟩

titre

Which fMRI clustering gives good brain parcellations?

auteur

Bertrand Thirion, Gaël Varoquaux, Elvis Dohmatob, Jean-Baptiste Poline

article

Frontiers in Neuroscience, 2014, 8 (167), pp.13. ⟨10.3389/fnins.2014.00167⟩

titre

Machine Learning Patterns for Neuroimaging-Genetic Studies in the Cloud

auteur

Benoit da Mota, Radu Tudoran, Alexandru Costan, Gaël Varoquaux, Goetz Brasche, Patricia J. Conrod, Hervé Lemaitre, Tomáš Paus, Marcella Rietschel, Vincent Frouin, Jean-Baptiste Poline, Gabriel Antoniu, Bertrand Thirion

article

Frontiers in Neuroinformatics, 2014, Recent advances and the future generation of neuroinformatics infrastructure, 8, ⟨10.3389/fninf.2014.00031⟩

titre

Probabilistic Atlas and Geometric Variability Estimation to Drive Tissue Segmentation

auteur

Hao Xu, Bertrand Thirion, Stéphanie Allassonnière

article

Statistics in Medicine, 2014, 33 (20), pp.24. ⟨10.1002/sim.6156⟩

titre

How machine learning is shaping cognitive neuroimaging

auteur

Gaël Varoquaux, Bertrand Thirion

article

GigaScience, 2014, 3, pp.28. ⟨10.1186/2047-217X-3-28⟩

titre

Principal Component Regression predicts functional responses across individuals

auteur

Bertrand Thirion, Gaël Varoquaux, Olivier Grisel, Cyril Poupon, Philippe Pinel

article

MICCAI, Sep 2014, Boston, United States

titre

Transport on Riemannian Manifold for Functional Connectivity-based Classification

auteur

Bernard Ng, Martin Dressler, Gaël Varoquaux, Jean-Baptiste Poline, Michael D. Greicius, Bertrand Thirion

article

MICCAI - 17th International Conference on Medical Image Computing and Computer Assisted Intervention, Polina Golland, Sep 2014, Boston, United States

titre

Deriving a multi-subject functional-connectivity atlas to inform connectome estimation

auteur

Ronald Phlypo, Bertrand Thirion, Gaël Varoquaux

article

Medical Image Computing and Computer-Assisted Intervention, Sep 2014, Boston, United States. pp.185-192, ⟨10.1007/978-3-319-10443-0_24⟩

titre

Benchmarking solvers for TV-l1 least-squares and logistic regression in brain imaging

auteur

Elvis Dohmatob, Alexandre Gramfort, Bertrand Thirion, Gaël Varoquaux

article

PRNI 2014 - 4th International Workshop on Pattern Recognition in NeuroImaging, Jun 2014, Tübingen, Germany

titre

Automatic pathology classification using a single feature machine learning - support vector machines

auteur

Fernando Yepes, Fabian Pedregosa, Bertrand Thirion, Yalin Wang, Natasha Lepore

article

SPIE Medical Imaging 2014, Feb 2014, San Diego, United States. pp.24, ⟨10.1117/12.2043943⟩

titre

Machine Learning for Neuroimaging with Scikit-Learn

auteur

Alexandre Abraham, Fabian Pedregosa, Michael Eickenberg, Philippe Gervais, Andreas Muller, Jean Kossaifi, Alexandre Gramfort, Bertrand Thirion, Gaël Varoquaux

article

Frontiers in Neuroscience, 2013, pp.15. ⟨10.3389/fninf.2014.00014⟩

titre

Randomized parcellation based inference.

auteur

Benoit da Mota, Virgile Fritsch, Gaël Varoquaux, Tobias Banaschewski, Gareth J. Barker, Arun L. W. Bokde, Uli Bromberg, Patricia J. Conrod, Jürgen Gallinat, Hugh Garavan, Jean-Luc Martinot, Frauke Nees, Tomáš Paus, Zdenka Pausova, Marcella Rietschel, Michael N. Smolka, Andreas Ströhle, Vincent Frouin, Jean-Baptiste Poline, Bertrand Thirion

article

NeuroImage, 2013, epub ahead of print. ⟨10.1016/j.neuroimage.2013.11.012⟩

titre

A framework for inter-subject prediction of functional connectivity from structural networks

auteur

Fani Deligianni, Gaël Varoquaux, Bertrand Thirion, David J. Sharp, Christian Ledig, Robert Leech, Daniel Rueckert

article

IEEE Transactions on Medical Imaging, 2013, epub ahead of print, ⟨10.1109/TMI.2013.2276916⟩

titre

Mapping cognitive ontologies to and from the brain

auteur

Yannick Schwartz, Bertrand Thirion, Gaël Varoquaux

article

NIPS (Neural Information Processing Systems), Dec 2013, United States

titre

Unsupervised Fiber Bundles Registration using Weighted Measures Geometric Demons

auteur

Viviana Siless, Sergio Medina, Pierre Fillard, Bertrand Thirion

article

Workshop on Multi Modal Brain Image Analysis, Li Shen - Tianming Liu - Pew-Thian Yap - Heng Huang - Dinggang Shen -Carl-Fredrik Westin, Sep 2013, Nagoya, Japan

titre

Bayesian Estimation of Probabilistic Atlas for Anatomically-Informed Functional MRI Group Analyses

auteur

Hao Xu, Bertrand Thirion, Stéphanie Allassonnière

article

MICCAI - 16th International Conference on Medical Image Computing and Computer Assisted Intervention - 2013, Sep 2013, Nagoya, Japan

titre

Implications of Inconsistencies between fMRI and dMRI on Multimodal Connectivity Estimation

auteur

Bernard Ng, Gaël Varoquaux, Jean-Baptiste Poline, Bertrand Thirion

article

MICCAI - 16th International Conference on Medical Image Computing and Computer Assisted Intervention - 2013, Kensaku Mori, Sep 2013, Nagoya, Japan

titre

Extracting brain regions from rest fMRI with Total-Variation constrained dictionary learning

auteur

Alexandre Abraham, Elvis Dohmatob, Bertrand Thirion, Dimitris Samaras, Gaël Varoquaux

article

MICCAI - 16th International Conference on Medical Image Computing and Computer Assisted Intervention - 2013, Sep 2013, Nagoya, Japan

titre

Enhancing the Reproducibility of Group Analysis with Randomized Brain Parcellations

auteur

Benoit da Mota, Virgile Fritsch, Gaël Varoquaux, Vincent Frouin, Jean-Baptiste Poline, Bertrand Thirion

article

MICCAI - 16th International Conference on Medical Image Computing and Computer Assisted Intervention - 2013, Sep 2013, Nagoya, Japan

titre

Cohort-level brain mapping: learning cognitive atoms to single out specialized regions

auteur

Gaël Varoquaux, Yannick Schwartz, Philippe Pinel, Bertrand Thirion

article

IPMI - Information Processing in Medical Imaging - 2013, William M. Wells, Sarang Joshi, Kilian M. Pohl, Jun 2013, Asilomar, United States. pp.438-449, ⟨10.1007/978-3-642-38868-2_37⟩

titre

A Novel Sparse Group Gaussian Graphical Model for Functional Connectivity Estimation

auteur

Bernard Ng, Gaël Varoquaux, Jean-Baptiste Poline, Bertrand Thirion

article

Information Processing in Medical Imaging, Jun 2013, Asilomar, United States

titre

Robust Group-Level Inference in Neuroimaging Genetic Studies

auteur

Virgile Fritsch, Benoit da Mota, Gaël Varoquaux, Vincent Frouin, Eva Loth, Jean-Baptiste Poline, Bertrand Thirion

article

Pattern Recognition in Neuroimaging, Jun 2013, Philadelphie, United States

titre

HRF estimation improves sensitivity of fMRI encoding and decoding models

auteur

Fabian Pedregosa, Michael Eickenberg, Bertrand Thirion, Alexandre Gramfort

article

3nd International Workshop on Pattern Recognition in NeuroImaging, Jun 2013, Philadelphia, United States

titre

A Comparison of Metrics and Algorithms for Fiber Clustering

auteur

Viviana Siless, Sergio Medina, Gaël Varoquaux, Bertrand Thirion

article

Pattern Recognition in NeuroImaging, Jun 2013, Philadelphia, United States

titre

Identifying predictive regions from fMRI with TV-L1 prior

auteur

Alexandre Gramfort, Bertrand Thirion, Gaël Varoquaux

article

Pattern Recognition in Neuroimaging (PRNI), Jun 2013, Philadelphia, United States

titre

Second order scattering descriptors predict fMRI activity due to visual textures

auteur

Michael Eickenberg, Fabian Pedregosa, Senoussi Mehdi, Alexandre Gramfort, Bertrand Thirion

article

PRNI 2013 - 3nd International Workshop on Pattern Recognition in NeuroImaging, Jun 2013, Philadelphia, United States

titre

An empirical comparison of surface-based and volume-based group studies in neuroimaging

auteur

Alan Tucholka, Virgile Fritsch, Jean-Baptiste Poline, Bertrand Thirion

article

NeuroImage, 2012, 63 (3), pp.1443-53. ⟨10.1016/j.neuroimage.2012.06.019⟩

titre

Hyperfrontality and hypoconnectivity during refreshing in schizophrenia.

auteur

Marie-Laure Grillon, Catherine Oppenheim, Gaël Varoquaux, Frédérique Charbonneau, Anne-Dominique Devauchelle, Marie-Odile Krebs, Franck Bayle, Bertrand Thirion, Caroline Huron

article

Psychiatry Research: Neuroimaging, 2012, 211 (3), pp.226-233. ⟨10.1016/j.pscychresns.2012.09.001⟩

titre

Significant correlation between a set of genetic polymorphisms and a functional brain network revealed by feature selection and sparse Partial Least Squares.

auteur

Vincent Guillemot, Vincent Frouin, Philippe Pinel, Christophe Lalanne, Laura Trinchera, Arthur Tenenhaus, Antonio Moreno, Monica Zilbovicius, Thomas Bourgeron, Stanislas Dehaene, Bertrand Thirion, Jean-Baptiste Poline

article

NeuroImage, 2012, 63 (1), pp.11-24. ⟨10.1016/j.neuroimage.2012.06.061⟩

titre

Multi-scale Mining of fMRI data with Hierarchical Structured Sparsity

auteur

Rodolphe Jenatton, Alexandre Gramfort, Vincent Michel, Guillaume Obozinski, Evelyn Eger, Francis Bach, Bertrand Thirion

article

SIAM Journal on Imaging Sciences, 2012, 5 (3), pp.835-856. ⟨10.1137/110832380⟩

titre

Detecting Outliers in High-Dimensional Neuroimaging Datasets with Robust Covariance Estimators

auteur

Virgile Fritsch, Gaël Varoquaux, Benjamin Thyreau, Jean-Baptiste Poline, Bertrand Thirion

article

Medical Image Analysis, 2012, 16, pp.1359-1370. ⟨10.1016/j.media.2012.05.002⟩

titre

A-Brain: Using the Cloud to Understand the Impact of Genetic Variability on the Brain

auteur

Gabriel Antoniu, Alexandru Costan, Benoit da Mota, Bertrand Thirion, Radu Tudoran

article

ERCIM News, 2012, pp.21-22

titre

Markov models for fMRI correlation structure: is brain functional connectivity small world, or decomposable into networks?

auteur

Gaël Varoquaux, Alexandre Gramfort, Jean Baptiste Poline, Bertrand Thirion

article

Journal of Physiology - Paris, 2012, 106, pp.212-221. ⟨10.1016/j.jphysparis.2012.01.001⟩

titre

Learning to rank from medical imaging data

auteur

Fabian Pedregosa, Elodie Cauvet, Gaël Varoquaux, Christophe Pallier, Bertrand Thirion, Alexandre Gramfort

article

Third International Workshop on Machine Learning in Medical Imaging - MLMI 2012, INRIA, Oct 2012, Nice, France

titre

A MapReduce Approach for Ridge Regression in Neuroimaging-Genetic Studies

auteur

Benoit da Mota, Michael Eickenberg, Soizic Laguitton, Vincent Frouin, Gaël Varoquaux, Jean-Baptiste Poline, Bertrand Thirion

article

DCICTIA-MICCAI - Data- and Compute-Intensive Clinical and Translational Imaging Applications in conjonction with the 15th International Conference on Medical Image Computing and Computer Assisted Intervention - 2012, Oct 2012, Nice, France

titre

Joint T1 and Brain Fiber Log-Demons Registration Using Currents to Model Geometry

auteur

Viviana Siless, Joan Glaunès, Pamela Guevara, Jean-François Mangin, Cyril Poupon, Denis Le Bihan, Bertrand Thirion, Pierre Fillard

article

MICCAI, Oct 2012, Nice, France, France

titre

Improving accuracy and power with transfer learning using a meta-analytic database

auteur

Yannick Schwartz, Gaël Varoquaux, Christophe Pallier, Philippe Pinel, Jean-Baptiste Poline, Bertrand Thirion

article

MICCAI, Oct 2012, Nice, France. pp.1-8

titre

Graph-based inter-subject classification of local fMRI patterns

auteur

Sylvain Takerkart, Guillaume Auzias, Bertrand Thirion, Daniele Schön, Liva Ralaivola

article

Third International Workshop Machine Learning in Medical Imaging - MLMI 2012 (Held in Conjunction with MICCAI 2012), Oct 2012, Nice, France. pp 184-192, ⟨10.1007/978-3-642-35428-1_23⟩

titre

A Novel Sparse Graphical Approach for Multimodal Brain Connectivity Inference

auteur

Bernard Ng, Gaël Varoquaux, Jean-Baptiste Poline, Bertrand Thirion

article

Medical Image Computing and Computer Assisted Intervention, Oct 2012, Nice, France

titre

Non-parametric Density Modeling and Outlier Detection in Medical Imaging Datasets

auteur

Virgile Fritsch, Gaël Varoquaux, Jean-Baptiste Poline, Bertrand Thirion

article

Machine Learning in Medical Imaging - Miccai 2012 workshop, Oct 2012, Nice, France. pp.207-214

titre

A fast computational framework for genome-wide association studies with neuroimaging data

auteur

Benoit da Mota, Vincent Frouin, Edouard Duchesnay, Soizic Laguitton, Gaël Varoquaux, Jean-Baptiste Poline, Bertrand Thirion

article

20th International Conference on Computational Statistics (COMPSTAT 2012), Aug 2012, Limassol, Cyprus

titre

On spatial selectivity and prediction across conditions with fMRI

auteur

Yannick Schwartz, Gaël Varoquaux, Bertrand Thirion

article

PRNI 2012 : 2nd International Workshop on Pattern Recognition in NeuroImaging, Jul 2012, London, United Kingdom. pp.53-56

titre

Connectivity-informed Sparse Classifiers for fMRI Brain Decoding

auteur

Bernard Ng, Viviana Siless, Gaël Varoquaux, Jean-Baptiste Poline, Bertrand Thirion, Rafeef Abugharbieh

article

Pattern Recognition in Neuroimaging, Christos Davatzikos, Moritz Grosse-Wentrup, Janaina Mourao-Miranda, Dimitri Van De Ville, Jul 2012, London, United Kingdom

titre

Improved brain pattern recovery through ranking approaches

auteur

Fabian Pedregosa, Elodie Cauvet, Gaël Varoquaux, Christophe Pallier, Bertrand Thirion, Alexandre Gramfort

article

PRNI 2012 : 2nd International Workshop on Pattern Recognition in NeuroImaging, Jul 2012, London, United Kingdom

titre

Decoding Visual Percepts Induced by Word Reading with fMRI

auteur

Alexandre Gramfort, Christophe Pallier, Gaël Varoquaux, Bertrand Thirion

article

Pattern Recognition in NeuroImaging (PRNI), 2012 International Workshop on, Jul 2012, Londres, United Kingdom. pp.13-16, ⟨10.1109/PRNI.2012.20⟩

titre

Multilayer Scattering Image Analysis Fits fMRI Activity in Visual Areas

auteur

Michael Eickenberg, Alexandre Gramfort, Bertrand Thirion

article

International Workshop on Pattern Recognition in NeuroImaging, Jul 2012, London, United Kingdom

titre

Small-sample brain mapping: sparse recovery on spatially correlated designs with randomization and clustering

auteur

Gaël Varoquaux, Alexandre Gramfort, Bertrand Thirion

article

International Conference on Machine Learning, Andrew McCallum, Jun 2012, Edimbourg, United Kingdom

titre

Scikit-learn: Machine Learning in Python

auteur

Fabian Pedregosa, Gaël Varoquaux, Alexandre Gramfort, Vincent Michel, Bertrand Thirion, Olivier Grisel, Mathieu Blondel, Peter Prettenhofer, Ron Weiss, Vincent Dubourg, Jake Vanderplas, Alexandre Passos, David Cournapeau, Matthieu Brucher, Matthieu Perrot, Edouard Duchesnay

article

Journal of Machine Learning Research, 2011

titre

A supervised clustering approach for fMRI-based inference of brain states

auteur

Vincent Michel, Alexandre Gramfort, Gaël Varoquaux, Evelyn Eger, Christine Keribin, Bertrand Thirion

article

Pattern Recognition, 2011, epub ahead of print. ⟨10.1016/j.patcog.2011.04.006⟩

titre

Multiclass Sparse Bayesian Regression for fMRI-Based Prediction

auteur

Vincent Michel, Evelyn Eger, Christine Keribin, Bertrand Thirion

article

International Journal of Biomedical Imaging, 2011, 2011, ⟨10.1155/2011/350838⟩

titre

Total variation regularization for fMRI-based prediction of behaviour.

auteur

Vincent Michel, Alexandre Gramfort, Gaël Varoquaux, Evelyn Eger, Bertrand Thirion

article

IEEE Transactions on Medical Imaging, 2011, 30 (7), pp.1328 - 1340. ⟨10.1109/TMI.2011.2113378⟩

titre

A Comparative Study of Algorithms for Intra- and Inter-subjects fMRI Decoding

auteur

Vincent Michel, Alexandre Gramfort, Evelyn Eger, Gaël Varoquaux, Bertrand Thirion

article

MLINI - Machine Learning and Interpretation in Neuroimaging - 2011, Dec 2011, Sierra Nevada, Spain. pp.1-8, ⟨10.1007/978-3-642-34713-9_1⟩

titre

Statistical Learning for Resting-State fMRI: Successes and Challenges

auteur

Gaël Varoquaux, Bertrand Thirion

article

Machine Learning and Interpretation in Neuroimaging, NIPS workshop, Dec 2011, Sierra Nevada, Spain. pp.172-177, ⟨10.1007/978-3-642-34713-9_22⟩

titre

Beyond brain reading: randomized sparsity and clustering to simultaneously predict and identify

auteur

Alexandre Gramfort, Gaël Varoquaux, Bertrand Thirion

article

NIPS 2011 MLINI Workshop, Dec 2011, Granada, Spain. pp.9-16, ⟨10.1007/978-3-642-34713-9_2⟩

titre

Detecting Outlying Subjects in High-Dimensional Neuroimaging Datasets with Regularized Minimum Covariance Determinant

auteur

Virgile Fritsch, Gaël Varoquaux, Thyreau Benjamin, Jean-Baptiste Poline, Bertrand Thirion

article

Medical Image Computing and Computer Assisted Intervention, Sep 2011, Toronto, Canada. pp. 264-271, ⟨10.1007/978-3-642-23626-6_33⟩

titre

Connectivity-informed fMRI Activation Detection

auteur

Bernard Ng, Abugharbieh Rafeef, Gaël Varoquaux, Jean Baptiste Poline, Bertrand Thirion

article

Medical Image Computing and Computed Aided Intervention, Sep 2011, Toronto, Canada. pp.285-292, ⟨10.1007/978-3-642-23629-7_35⟩

titre

A probabilistic framework to infer brain functional connectivity from anatomical connections

auteur

Fani Deligianni, Gaël Varoquaux, Bertrand Thirion, Emma Robinson, David J. Sharp, David A. Edwards, Daniel Rueckert

article

Information Processing in Medical Imaging, Gábor Székely, Horst Hahn, Jul 2011, Kaufbeuren, Germany. pp.296-307, ⟨10.1007/978-3-642-22092-0_25⟩

titre

Multi-subject dictionary learning to segment an atlas of brain spontaneous activity

auteur

Gaël Varoquaux, Alexandre Gramfort, Fabian Pedregosa, Vincent Michel, Bertrand Thirion

article

Information Processing in Medical Imaging, Gábor Székely, Horst Hahn, Jul 2011, Kaufbeuren, Germany. pp.562-573, ⟨10.1007/978-3-642-22092-0_46⟩

titre

Multi-scale Mining of fMRI Data with Hierarchical Structured Sparsity

auteur

Rodolphe Jenatton, Alexandre Gramfort, Vincent Michel, Guillaume Obozinski, Francis Bach, Bertrand Thirion

article

PRNI 2011 - IEEE International Workshop on Pattern Recognition in NeuroImaging, May 2011, Seoul, South Korea. ⟨10.1109/PRNI.2011.15⟩

titre

Phase delays within visual cortex shape the response to steady-state visual stimulation.

auteur

Benoit Cottereau, Jean Lorenceau, Alexandre Gramfort, Maureen Clerc, Bertrand Thirion, Sylvain Baillet

article

NeuroImage, 2010, 54 (3), pp.1919-1929. ⟨10.1016/j.neuroimage.2010.10.004⟩

titre

A group model for stable multi-subject ICA on fMRI datasets.

auteur

Gaël Varoquaux, Sepideh Sadaghiani, Philippe Pinel, Andreas Kleinschmidt, Jean-Baptiste Poline, Bertrand Thirion

article

NeuroImage, 2010, 51 (1), pp.288-99. ⟨10.1016/j.neuroimage.2010.02.010⟩

titre

Inference of a HARDI fiber bundle atlas using a two-level clustering strategy.

auteur

Pamela Guevara, Cyril Poupon, Denis Rivière, Yann Cointepas, Linda Marrakchi, Maxime Descoteaux, Pierre Fillard, Bertrand Thirion, Jean-François Mangin

article

Medical image computing and computer-assisted intervention : MICCAI .. International Conference on Medical Image Computing and Computer-Assisted Intervention, 2010, 13 (Pt 1), pp.550-7

titre

Brain covariance selection: better individual functional connectivity models using population prior

auteur

Gaël Varoquaux, Alexandre Gramfort, Jean Baptiste Poline, Bertrand Thirion

article

Advances in Neural Information Processing Systems, John Lafferty, Dec 2010, Vancouver, Canada

titre

Detection of brain functional-connectivity difference in post-stroke patients using group-level covariance modeling

auteur

Gaël Varoquaux, Flore Baronnet, Andreas Kleinschmidt, Pierre Fillard, Bertrand Thirion

article

Medical Image Computing and Computer Added Intervention, Tianzi Jiang, Sep 2010, Beijing, China. ⟨10.1007/978-3-642-15705-9_25⟩

titre

Multi-Class Sparse Bayesian Regression for Neuroimaging data analysis

auteur

Vincent Michel, Evelyn Eger, Christine Keribin, Bertrand Thirion

article

International Workshop on Machine Learning in Medical Imaging (MLMI) In conjunction with MICCAI 2010, Sep 2010, Beijing, China. pp.50-58, ⟨10.1007/978-3-642-15948-0⟩

titre

Accurate Definition of Brain Regions Position Through the Functional Landmark Approach

auteur

Bertrand Thirion, Gaël Varoquaux, Jean-Baptiste Poline

article

13th International Conference on Medical Image Computing and Computer Assisted Intervention, Sep 2010, Beijing, China

titre

Parcellation Schemes and Statistical Tests to Detect Active Regions on the Cortical Surface

auteur

Bertrand Thirion, Alan Tucholka, Jean-Baptiste Poline

article

19th International Conference on Computational Statistics, Aug 2010, Paris, France. pp.565--572

titre

Imaging genetics: bio-informatics and bio-statistics challenges

auteur

Jean-Baptiste Poline, Christophe Lalanne, Arthur Tenenhaus, Edouard Duchesnay, Bertrand Thirion, Vincent Frouin

article

19th International Conference on Computational Statistics, Aug 2010, Paris, France

titre

Random Forests based feature selection for decoding fMRI data

auteur

Robin Genuer, Vincent Michel, Evelyn Eger, Bertrand Thirion

article

COMPSTAT 2010 - 19th International Conference on Computational Statistics, Aug 2010, Paris, France. pp.1071-1078

titre

Total Variation regularization enhances regression-based brain activity prediction

auteur

Vincent Michel, Alexandre Gramfort, Gaël Varoquaux, Bertrand Thirion

article

1st ICPR Workshop on Brain Decoding - Pattern recognition challenges in neuroimaging - 20th International Conference on Pattern Recognition, Aug 2010, Istanbul, Turkey. pp.9-12, ⟨10.1109/WBD.2010.13⟩

titre

A supervised clustering approach for extracting predictive information from brain activation images

auteur

Vincent Michel, Evelyn Eger, Christine Keribin, Jean-Baptiste Poline, Bertrand Thirion

article

Workshop on Mathematical Methods in Biomedical Image Analysis - IEEE Conference on Computer Vision and Pattern Recognition, Jun 2010, San Francisco, United States. pp.08

titre

ICA-based sparse feature recovery from fMRI datasets

auteur

Gaël Varoquaux, Merlin Keller, Jean Baptiste Poline, Philippe Ciuciu, Bertrand Thirion

article

Biomedical Imaging, IEEE International Symposium on, Apr 2010, Rotterdam, Netherlands. pp.1177

titre

An automatic valuation system in the human brain: evidence from functional neuroimaging.

auteur

Maël Lebreton, Soledad Jorge, Vincent Michel, Bertrand Thirion, Mathias Pessiglione

article

Neuron, 2009, 64 (3), pp.431-9. ⟨10.1016/j.neuron.2009.09.040⟩

titre

Deciphering cortical number coding from human brain activity patterns.

auteur

Evelyn Eger, Vincent Michel, Bertrand Thirion, Alexis Amadon, Stanislas Dehaene, Andreas Kleinschmidt

article

Current Biology - CB, 2009, 19 (19), pp.1608-15. ⟨10.1016/j.cub.2009.08.047⟩

titre

Recruitment of an area involved in eye movements during mental arithmetic.

auteur

André Knops, Bertrand Thirion, Edward M Hubbard, Vincent Michel, Stanislas Dehaene

article

Science, 2009, 324 (5934), pp.1583-5. ⟨10.1126/science.1171599⟩

titre

Discriminative network models of Schizophrenia

auteur

Guillermo A. Cecchi, Irina Rish, Benjamin Thyreau, Bertrand Thirion, Marion Plaze, Jean-Luc Martinot, Marie-Laure Pallière-Martinot, Jean-Baptiste Poline

article

NIPS 2009 - 23rd Annual Conference on Neural Information Processing Systems, Dec 2009, Vancouver, Canada. pp.252-260

titre

Surface-based versus volume-based fMRI group analysis: a case study

auteur

Alan Tucholka, Merlin Keller, Jean-Baptiste Poline, Alexis Roche, Bertrand Thirion

article

MICCAI 2009 Functional NeuroImaging Workshop, Bertrand Thirion, Alexis Roche, Philippe Ciuciu, Sep 2009, Londres, United Kingdom

titre

Adaptive multi-class Bayesian sparse regression - An application to brain activity classification

auteur

Vincent Michel, Evelyn Eger, Christine Keribin, Bertrand Thirion

article

MICCAI 2009: fMRI data analysis workshop - Medical Image Computing and Computer Aided Intervention, Sep 2009, London, United Kingdom. pp.1

titre

CanICA: Model-based extraction of reproducible group-level ICA patterns from fMRI time series

auteur

Gaël Varoquaux, Sepideh Sadaghiani, Jean Baptiste Poline, Bertrand Thirion

article

Medical Image Computing and Computer Aided Intervention, Sep 2009, London, United Kingdom. pp.1

titre

A fully Bayesian approach to the parcel-based detection-estimation of brain activity in fMRI.

auteur

Salima Makni, Jérôme Idier, Thomas Vincent, Bertrand Thirion, Ghislaine Dehaene-Lambertz, Philippe Ciuciu

article

NeuroImage, 2008, 41 (3), pp.941-69. ⟨10.1016/j.neuroimage.2008.02.017⟩

titre

Connectivity-Based Parcellation of the Cortical Mantle Using q-Ball Diffusion Imaging

auteur

Muriel Perrin, Yann Cointepas, Arnaud Cachia, Cyril Poupon, Bertrand Thirion, Denis Rivière, Pascal Cathier, Vincent El Kouby, André Constantinesco, Denis Le Bihan, Jean-François Mangin

article

International Journal of Biomedical Imaging, 2008, 2008, pp.368406. ⟨10.1155/2008/368406⟩

titre

Probabilistic anatomo-functional parcellation of the cortex: how many regions?

auteur

Alan Tucholka, Bertrand Thirion, Matthieu Perrot, Philippe Pinel, Jean-François Mangin, Jean-Baptiste Poline

article

Medical image computing and computer-assisted intervention : MICCAI .. International Conference on Medical Image Computing and Computer-Assisted Intervention, 2008, 11 (Pt 2), pp.399-406. ⟨10.1007/978-3-540-85990-1_48⟩

titre

Mutual information-based feature selection enhances fMRI brain activity classification

auteur

Vincent Michel, Cécilia Damon, Bertrand Thirion

article

2008 5th IEEE international symposium on biomedical imaging: From nano to macro, May 2008, Paris, France. pp.592 - 595, ⟨10.1109/ISBI.2008.4541065⟩

titre

Analysis of a large fMRI cohort: Statistical and methodological issues for group analyses.

auteur

Bertrand Thirion, Philippe Pinel, Sébastien Mériaux, Alexis Roche, Stanislas Dehaene, Jean-Baptiste Poline

article

NeuroImage, 2007, 35 (1), pp.105-20. ⟨10.1016/j.neuroimage.2006.11.054⟩

titre

Challenging the estimation of cortical activity from MEG with simulated fMRI-constrained retinotopic maps.

auteur

Alexandre Gramfort, Benoit Cottereau, Maureen Clerc, Bertrand Thirion, Sylvain Baillet

article

Conference proceedings : .. Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual Conference, 2007, 2007, pp.4945-8. ⟨10.1109/IEMBS.2007.4353450⟩

titre

Fast reproducible identification and large-scale databasing of individual functional cognitive networks

auteur

Philippe Pinel, Bertrand Thirion, Sébastien Meriaux, Antoinette Jobert, Julien Serres, Denis Le Bihan, Jean-Baptiste Poline, Stanislas Dehaene

article

BMC Neuroscience, 2007, 8 (1), pp.91. ⟨10.1186/1471-2202-8-91⟩