Publications HAL de Cotin de la structure 425649

Journal articles

titre
Real‐Time FE Simulation for Large‐Scale Problems Using Precondition‐Based Contact Resolution and Isolated DOFs Constraints
auteur
Ziqiu Zeng, Stéphane Cotin, Hadrien Courtecuisse
article
Computer Graphics Forum, Wiley, 2022, ⟨10.1111/cgf.14563⟩
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This paper presents a fast method to compute large-scale problems in real-time finite element simula .....
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titre
Model-Based Thermometry for Laser Ablation Procedure Using Kalman Filters and Sparse Temperature Measurements
auteur
Nava Schulmann, Mohammadamin Soltani-Sarvestani, Martina de Landro, Sanzhar Korganbayev, Stéphane Cotin, Paola Saccomandi
article
IEEE Transactions on Biomedical Engineering, Institute of Electrical and Electronics Engineers, In press, ⟨10.1109/TBME.2022.3155574⟩
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We implement a data-assimilation Bayesian framework for the reconstruction of the spatiotemporal pro .....
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https://hal.inria.fr/hal-03598477/file/Paper_online_earlyaccess.pdf BibTex
titre
Three‐dimensional physics‐based registration of pelvic system using 2D dynamic magnetic resonance imaging slices
auteur
Hadrien Courtecuisse, Zhifan Jiang, Olivier Mayeur, Jean-Francois Witz, Pauline Lecomte-Grosbras, Michel Cosson, Mathias Brieu, Stéphane Cotin
article
Strain, Wiley-Blackwell, 2020, 56 (3), ⟨10.1111/str.12339⟩
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This paper introduces a method for dynamic 3D registration of female pelvic organs using 2D dynamic .....
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https://hal.inria.fr/hal-02873023/file/3D_Physics_based_Registration_of_Pelvic_System_Using_2D_Dynamic_MRI_Slices%281%29.pdf BibTex
titre
Estimation of boundary conditions for patient-specific liver simulation during augmented surgery
auteur
Sergei Nikolaev, Stéphane Cotin
article
International Journal of Computer Assisted Radiology and Surgery, Springer Verlag, 2020, 15 (7), pp.1107-1115. ⟨10.1007/s11548-020-02188-x⟩
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Purpose: Augmented reality can improve the outcome of hepatic surgeries, assuming an accurate liver .....
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https://hal.archives-ouvertes.fr/hal-02634875/file/Estimation_of_boundary_conditions_for_patient_specific_liver_simulation_during_augmented_surgery.pdf BibTex
titre
Constrained Stochastic State Estimation of Deformable 1D Objects: Application to Single-view 3D Reconstruction of Catheters with Radio-opaque Markers
auteur
Raffaella Trivisonne, Erwan Kerrien, Stéphane Cotin
article
Computerized Medical Imaging and Graphics, Elsevier, 2020, 81, ⟨10.1016/j.compmedimag.2020.101702⟩
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Minimally invasive fluoroscopy-based procedures are the gold standard for diagnosis and treatment of .....
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https://hal.archives-ouvertes.fr/hal-02469093/file/CMIG.pdf BibTex
titre
Augmented Reality during Open Liver Surgery Using a Markerless Non-rigid Registration System
auteur
Nicolas Golse, Antoine Petit, Maïté Lewin, Eric Vibert, Stéphane Cotin
article
Journal of Gastrointestinal Surgery, Springer Verlag, 2020, ⟨10.1007/s11605-020-04519-4⟩
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Introduction Intraoperative navigation during liver resection remains difficult and requires high ra .....
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titre
Elastic registration based on compliance analysis and biomechanical graph matching
auteur
Jaime Garcia Guevara, Igor Peterlik, Marie-Odile Berger, Stéphane Cotin
article
Annals of Biomedical Engineering, Springer Verlag, 2020, 48, pp.447-462. ⟨10.1007/s10439-019-02364-4⟩
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An automatic elastic registration method suited for vascularized organs is proposed. The vasculature .....
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https://hal.archives-ouvertes.fr/hal-02401280/file/abmeFormatMain.pdf BibTex
titre
Force classification during robotic interventions through simulation-trained neural networks
auteur
Andrea Mendizabal, Raphael Sznitman, Stéphane Cotin
article
International Journal of Computer Assisted Radiology and Surgery, Springer Verlag, 2019, 14, pp.1601-1610. ⟨10.1007/s11548-019-02048-3⟩
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Intravitreal injection is among the most frequent treatment strategies for chronic ophthalmic diseas .....
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https://hal.inria.fr/hal-02268782/file/IJCARS_rebuttal_bis%282%29.pdf BibTex
titre
Electromagnetic Tracking for Deep Liver Targets: A preliminary feasibility study
auteur
Stephen Hinds, Herman Alexander Jaeger, Richard Burke, Brodie O’sullivan, Joseph Keane, Fabian Trauzettel, Bruno Marques, Stéphane Cotin, Brian Bird, Hakon Leira, Thomas Langø, Pádraig Cantillon-Murphy
article
International Journal of Computer Assisted Radiology and Surgery, Springer Verlag, 2019, ⟨10.1007/s11548-019-01983-5⟩
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Electromagnetic tracking is a core platform technology in the navigation and visualisation of image- .....
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https://hal.inria.fr/hal-02121900/file/Electromagnetic%20Tracking%20for%20Deep%20Liver%20Targets%20%281%29.pdf BibTex
titre
Simulation of hyperelastic materials in real-time using deep learning
auteur
Andrea Mendizabal, Pablo Márquez-Neila, Stéphane Cotin
article
Medical Image Analysis, Elsevier, 2019, 59, pp.101569. ⟨10.1016/j.media.2019.101569⟩
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The finite element method (FEM) is among the most commonly used numerical methods for solving engine .....
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https://hal.inria.fr/hal-02097119/file/hal_version_media_paper.pdf BibTex
titre
Quantifying the uncertainty in a hyperelastic soft tissue model with stochastic parameters
auteur
Paul Hauseux, Jack S. Hale, Stéphane Cotin, Stéphane P.A. Bordas
article
Applied Mathematical Modelling, Elsevier, 2018, 62, pp.86-102. ⟨10.1016/j.apm.2018.04.021⟩
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We present a simple open-source semi-intrusive computational method to propagate uncertainties throu .....
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https://hal.inria.fr/hal-03698534/file/quantifying-uncertainty-hyperelastic-parameters_hauseux_et_al.pdf BibTex
titre
Calipso: Physics-based Image and Video Editing through CAD Model Proxies
auteur
Nazim Haouchine, Frédérick Roy, Hadrien Courtecuisse, Matthias Niessner, Stéphane Cotin
article
The Visual Computer, Springer Verlag, 2018, 36, pp.211-226. ⟨10.1007/s00371-018-1600-0⟩
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We present Calipso, an interactive method for editing images and videos in a physically-coherent man .....
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https://hal.inria.fr/hal-01890684/file/calipso_haouchine.pdf BibTex
titre
Biomechanics-based graph matching for augmented CT-CBCT
auteur
Jaime Garcia Guevara, Igor Peterlik, Marie-Odile Berger, Stephane Cotin
article
International Journal of Computer Assisted Radiology and Surgery, Springer Verlag, 2018, 13 (6), pp.805-813. ⟨10.1007/s11548-018-1755-1⟩
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Purpose: Augmenting intraoperative cone beam computed tomography (CBCT) images with preoperative com .....
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https://hal.inria.fr/hal-01761521/file/template.pdf BibTex
titre
Fast Elastic Registration of Soft Tissues under Large Deformations
auteur
Igor Peterlik, Hadrien Courtecuisse, Robert Rohling, Purang Abolmaesumi, Christopher Nguan, Stéphane Cotin, Septimiu E Salcudean
article
Medical Image Analysis, Elsevier, 2018, 45, pp.24-40. ⟨10.1016/j.media.2017.12.006⟩
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A fast and accurate fusion of intra-operative images with a pre-operative data is a key component of .....
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https://hal.inria.fr/hal-01613757/file/supineFlankPaper.pdf BibTex
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titre
Vision-based Force Feedback Estimation for Robot-assisted Surgery using Instrument-constrained Biomechanical 3D Maps
auteur
Nazim Haouchine, Winnie Kuang, Stéphane Cotin, Michael Yip
article
IEEE Robotics and Automation Letters, IEEE 2018, ⟨10.1109/LRA.2018.2810948⟩
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We present a method for estimating visual and haptic force feedback on robotic surgical systems that .....
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https://hal.inria.fr/hal-01720259/file/17-0884_06_MS.pdf BibTex
titre
Intraoperative Biomechanical Registration of the Liver: Does the Heterogeneity of the Liver Matter?
auteur
Rosalie Plantefève, Igor Peterlik, Stéphane Cotin
article
Innovation and Research in BioMedical engineering, Elsevier Masson, 2018, 39 (1), pp.18-25. ⟨10.1016/j.irbm.2017.10.005⟩
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Background: Preoperative images such as computed tomography scans or magnetic resonance imaging cont .....
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https://hal.inria.fr/hal-01625573/file/article_IRBM.pdf BibTex
titre
Controlling the error on target motion through real-time mesh adaptation: applications to Deep Brain Stimulation
auteur
Huu Phuoc Bui, Satyendra Tomar, Hadrien Courtecuisse, Michel Audette, Stéphane Cotin, Stéphane P A Bordas
article
International Journal for Numerical Methods in Biomedical Engineering, John Wiley and Sons, 2017, pp.1-26. ⟨10.1002/cnm.2958⟩
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An error-controlled mesh refinement procedure for needle insertion simulations is presented. As an e .....
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https://hal.archives-ouvertes.fr/hal-01672962/file/ijnmbe_2017_adaptivity_brain_Bui_et_al.pdf BibTex
titre
Real-time Error Control for Surgical Simulation
auteur
Huu Phuoc Bui, Satyendra Tomar, Hadrien Courtecuisse, Stéphane Cotin, Stéphane Bordas
article
IEEE Transactions on Biomedical Engineering, Institute of Electrical and Electronics Engineers, 2017, pp.12
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Objective: To present the first real-time a poste-riori error-driven adaptive finite element approac .....
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https://hal.inria.fr/hal-01514621/file/TBME_2017_error_controlled_refinement_final.pdf BibTex
titre
Multiorgan Motion Tracking in Dynamic Magnetic Resonance Imaging for Evaluation of Pelvic System Mobility and Shear Strain
auteur
Zhifan Jiang, Jean-François Witz, Pauline Lecomte-Grosbras, Jeremie Dequidt, Stéphane Cotin, Christelle Rubod, Christian Duriez, Mathias Brieu
article
Strain, Wiley-Blackwell, 2017, 53 (2), ⟨10.1111/str.12224⟩
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Female pelvic disorders have a large social impact, the diagnosis of which relies on a key indicatio .....
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https://hal.inria.fr/hal-01496177/file/Multiorgan%20Motion%20Tracking%20in%20Dynamic%20MRI%20%282017%29.pdf BibTex
titre
Blood vessel modeling for interactive simulation of interventional neuroradiology procedures
auteur
Erwan Kerrien, Ahmed Yureidini, Jeremie Dequidt, Christian Duriez, René Anxionnat, Stéphane Cotin
article
Medical Image Analysis, Elsevier, 2017, 35, pp.685 - 698. ⟨10.1016/j.media.2016.10.003⟩
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Endovascular interventions can benefit from interactive simulation in their training phase but also .....
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https://hal.inria.fr/hal-01390923/file/medima_20161008.pdf BibTex
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titre
Interactive Training System for Interventional Electrocardiology Procedures
auteur
Hugo Talbot, Federico Spadoni, Christian Duriez, Maxime Sermesant, Stéphane Cotin, Hervé Delingette
article
Medical Image Analysis, Elsevier, 2016, 8789, pp.11-19. ⟨10.1007/978-3-319-12057-7_2⟩
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Recent progress in cardiac catheterization and devices has allowed the development of new therapies .....
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https://hal.inria.fr/hal-01338346/file/Talbot_H.pdf BibTex
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titre
Handling Topological Changes during Elastic Registration: Application to Augmented Reality in Laparoscopic Surgery
auteur
Christoph Joachim Paulus, Nazim Haouchine, Seong-Ho Kong, Renato Vianna Soares, David Cazier, Stéphane Cotin
article
International Journal of Computer Assisted Radiology and Surgery, Springer Verlag, 2016, 12, pp.461-470. ⟨10.1007/s11548-016-1502-4⟩
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Purpose: Locating the internal structures of an organ is a critical aspect of many surgical procedur .....
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https://hal.inria.fr/hal-01397409/file/ijcars2016.pdf BibTex
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titre
Robust Augmented Reality registration method for Localization of Solid Organs’ Tumors Using CT-derived Virtual Biomechanical Model and Fluorescent Fiducials
auteur
Seong-Ho Kong, Nazim Haouchine, Renato Soares, Andrey S Klymchenko, Bohdan Andreiuk, Bruno Marques, Galyna Shabat, Thierry Piéchaud, Michele Diana, Stéphane Cotin, Jacques Marescaux
article
Surgical Endoscopy, Springer Verlag (Germany), 2016, ⟨10.1007/s00464-016-5297-8⟩
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Accurate localization of solid organs tumors is crucial to ensure both radicality and organ function .....
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https://hal.archives-ouvertes.fr/hal-01314963/file/surg-endosc.pdf BibTex
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titre
Patient-specific Biomechanical Modeling for Guidance during Minimally-invasive Hepatic Surgery
auteur
Rosalie Plantefève, Igor Peterlik, Nazim Haouchine, Stéphane Cotin
article
Annals of Biomedical Engineering, Springer Verlag, 2015
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During the minimally-invasive liver surgery, only the partial surface view of the liver is usually p .....
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https://hal.inria.fr/hal-01205194/file/ABME.pdf BibTex
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titre
Virtual Cutting of Deformable Objects based on Efficient Topological Operations
auteur
Christoph Paulus, Lionel Untereiner, Hadrien Courtecuisse, Stephane Cotin, David Cazier
article
The Visual Computer, Springer Verlag, 2015, 31 (6-8), pp.831-841. ⟨10.1007/s00371-015-1123-x⟩
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Virtual cutting of deformable objects is at the core of many applications in interactive simulation .....
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https://hal.archives-ouvertes.fr/hal-01162099/file/2015CGI.pdf BibTex
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titre
Preoperative trajectory planning for percutaneous procedures in deformable environments
auteur
Noura Hamzé, Igor Peterlík, Stéphane Cotin, Caroline Essert
article
Computerized Medical Imaging and Graphics, Elsevier, 2015, 47, pp.16-28. ⟨10.1016/j.compmedimag.2015.10.002⟩
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In image-guided percutaneous interventions, a precise planning of the needle path is a key factor to .....
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https://hal.inria.fr/hal-01242842/file/prop_hamze.pdf BibTex
titre
B-spline Based Multi-organ Detection in Magnetic Resonance Imaging
auteur
Zhifan Jiang, Jean-Francois Witz, M Lecomte-Grosbras, Jeremie Dequidt, Christian Duriez, Michel Cosson, Stéphane Cotin, M Brieu
article
Strain, Wiley-Blackwell, 2015, 51, pp.235 - 247. ⟨10.1111/str.12136⟩
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In the context of the female pelvic medicine, non-invasive Magnetic Resonance Imaging (MRI) is widel .....
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https://hal.inria.fr/hal-01204589/file/B-spline%20Based%20Multi-organ%20Detection%20in%20Magnetic%20Resonance%20Imaging%20%282015%29.pdf BibTex
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titre
Monocular 3D Reconstruction and Augmentation of Elastic Surfaces with Self-occlusion Handling
auteur
Nazim Haouchine, Jeremie Dequidt, Marie-Odile Berger, Stephane Cotin
article
IEEE Transactions on Visualization and Computer Graphics, Institute of Electrical and Electronics Engineers, 2015, pp.14. ⟨10.1109/TVCG.2015.2452905⟩
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This paper focuses on the 3D shape recovery and augmented reality on elastic objects with self-occlu .....
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https://hal.inria.fr/hal-01186011/file/haouchine_tvcg_2015.pdf BibTex

Conference papers

titre
An Optimal Control Problem for Elastic Registration and Force Estimation in Augmented Surgery
auteur
Guillaume Mestdagh, Stéphane Cotin
article
MICCAI 2022 - 25th International Conference on Medical Image Computing and Computer Assisted Intervention, Sep 2022, Singapore, Singapore
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The nonrigid alignment between a pre-operative biomechanical model and an intra-operative observatio .....
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https://hal.inria.fr/hal-03691913/file/mestdagh-cotin-2022-preprint.pdf BibTex
titre
Unscented Kalman Filtering for Real Time Thermometry During Laser Ablation Interventions
auteur
Mohammadamin Soltani-Sarvestani, Stéphane Cotin, Paola Saccomandi
article
EMBC 2022 - International Engineering in Medicine and Biology Conference, Jul 2022, Glasgow, United Kingdom
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We present a data-assimilation Bayesian framework in the context of laser ablation for the treatment .....
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https://hal.inria.fr/hal-03698066/file/Soltani_EMBC_2022_final_2_PS_last.pdf BibTex
titre
Intra-operative Update of Boundary Conditions for Patient-specific Surgical Simulation
auteur
Eleonora Tagliabue, Marco Piccinelli, Diego Dall'Alba, Juan Verde, Micha Pfeiffer, Riccardo Marin, Stefanie Speidel, Paolo Fiorini, Stéphane Cotin
article
MICCAI 2021 - 24th International Conference on Medical Image Computing and Computer Assisted Intervention, Sep 2021, Strasbourg, France. pp.373-382
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Patient-specific Biomechanical Models (PBMs) can enhance computer assisted surgical procedures with .....
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https://hal.archives-ouvertes.fr/hal-03315008/file/IntraopUpdateOfBCForSurgicalSimulation.pdf BibTex
titre
Deformation Aware Augmented Reality for Craniotomy using 3D/2D Non-rigid Registration of Cortical Vessels
auteur
Nazim Haouchine, Parikshit Juvekar, William M Wells Iii, Stéphane Cotin, Alexandra Golby, Sarah Frisken
article
Medical Image Computing and Computer Assisted Intervention, Oct 2020, Lima, Peru. pp.735--744
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Intra-operative brain shift is a well-known phenomenon that describes non-rigid deformation of brain .....
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https://hal.inria.fr/hal-02876726/file/MICCAI_2020_Cortical.pdf BibTex
titre
Use of stereo-laparoscopic liver surface reconstruction to compensate for pneumoperitoneum deformation through biomechanical modeling.
auteur
Andrea Teatini, Jean-Nicolas Brunet, Sergei Nikolaev, Bjørn Edwin, Stéphane Cotin, Ole Jakob Elle
article
VPH2020 - Virtual Physiological Human, Aug 2020, Paris, France
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Abdominal organs undergo large deformations due to intra-abdominal pressure (pneumoperitoneum) durin .....
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https://hal.inria.fr/hal-03130613/file/VPH2020_conference.pdf BibTex
titre
Former et guider les chirurgiens grâce à la simulation numérique
auteur
Stéphane Cotin
article
Séminaire du LIRIMA, Jul 2020, [En distanciel], France
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Au cours de cette présentation, nous verrons comment les résultats récents dans le domaine de la .....
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titre
Estimation of boundary conditions for patient-specific liver simulation during augmented surgery
auteur
Sergei Nikolaev, Stéphane Cotin
article
IPCAI 2020 - The 11th International Conference on Information Processing in Computer-Assisted Interventions, Jun 2020, Munich, Germany. pp.1107-1115, ⟨10.1007/s11548-020-02188-x⟩
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Purpose: Augmented reality can improve the outcome of hepatic surgeries, assuming an accurate liver .....
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https://hal.archives-ouvertes.fr/hal-03697401/file/Estimation_of_boundary_conditions_for_patient_specific_liver_simulation_during_augmented_surgery.pdf BibTex
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titre
Alignment of Cortical Vessels viewed through the Surgical Microscope with Preoperative Imaging to Compensate for Brain Shift
auteur
Nazim Haouchine, Parikshit Juvekar, Alexandra Golby, William M Wells, Stéphane Cotin, Sarah Frisken
article
Medical Imaging 2020: Image-Guided Procedures, Robotic Interventions, and Modeling, Feb 2020, Houston, United States
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Brain shift is a non-rigid deformation of brain tissue that is affected by loss of cerebrospinal flu .....
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https://hal.inria.fr/hal-03065632/file/haouchine_SPIE_2020.pdf BibTex
titre
Physics-based Deep Neural Network for Augmented Reality during Liver Surgery
auteur
Jean-Nicolas Brunet, Andrea Mendizabal, Antoine Petit, Nicolas Golse, Eric Vibert, Stéphane Cotin
article
MICCAI 2019 - 22nd International Conference on Medical Image Computing and Computer Assisted Intervention, Oct 2019, Shenzhen, China. pp.8, ⟨10.1007/978-3-030-32254-0_16⟩
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In this paper we present an approach combining a finite element method and a deep neural network to .....
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https://hal.inria.fr/hal-02158862/file/MICCAI2019%284%29.pdf BibTex
titre
Physics-based Deep Neural Network for Real-Time Lesion Tracking in Ultrasound-guided Breast Biopsy
auteur
Andrea Mendizabal, Eleonora Tagliabue, Jean-Nicolas Brunet, Diego Dall'Alba, Paolo Fiorini, Stéphane Cotin
article
Computational Biomechanics for Medicine XIV, Oct 2019, Shenzhen, China
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In the context of ultrasound (US) guided breast biopsy, image fusion techniques can be employed to t .....
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https://hal.inria.fr/hal-02311277/file/camera_ready_manuscript.pdf BibTex
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titre
Deformed Reality
auteur
Antoine Petit, Nazim Haouchine, Frédérick Roy, Dan B Goldman, Stéphane Cotin
article
Computer Graphics & Visual Computing (Eurographics), Sep 2019, Bangor, United Kingdom
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We present Deformed Reality, a new way of interacting with an augmented reality environment by manip .....
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https://hal.inria.fr/hal-02320444/file/paper1011_CRC.pdf BibTex
titre
The effect of discretization on parameter identification. Application to patient-specific simulations
auteur
Nava Weingort Schulmann, Stéphane Cotin, Igor Peterlík
article
CMBBE 2019 - 16th International Symposium on Computer Methods in Biomechanics and Biomedical Engineering, Aug 2019, New York (NY), United States
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Identifying the elastic parameters of a finite element model from a dynamically acquired set of obse .....
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https://hal.archives-ouvertes.fr/hal-02276130/file/The%20effect%20of%20discretization%20on%20parameter%20identification%20%281%29.pdf BibTex
titre
Corotated meshless implicit dynamics for deformable bodies
auteur
Jean-Nicolas Brunet, Vincent Magnoux, Benoît Ozell, Stéphane Cotin
article
WSCG 2019 - 27th International Conference on Computer Graphics, Visualization and Computer Vision, May 2019, Pilsen, Czech Republic. ⟨10.24132/CSRN.2019.2901.1.11⟩
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This paper proposes a fast, stable and accurate meshless method to simulate geometrically non-linear .....
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https://hal.inria.fr/hal-02119414/file/%21%21_CSRN-2801-11.pdf BibTex
titre
Environment-aware non-rigid registration in surgery using physics-based simulation
auteur
Antoine Petit, Stéphane Cotin
article
ACCV 2018 - 14th Asian Conference on Computer Vision, Dec 2018, Perth, Australia
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This paper presents a system for capturing the deformations of soft objects undergoing elastic defor .....
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https://hal.archives-ouvertes.fr/hal-01930366/file/accv2018submission_apetit_vf1.pdf BibTex
titre
Capturing Deformations of Interacting Non-rigid Objects Using RGB-D Data
auteur
Antoine Petit, Stéphane Cotin, Vincenzo Lippiello, Bruno Siciliano
article
IROS 2018 - IEEE/RSJ International Conference on Intelligent Robots and Systems, Oct 2018, Madrid, Spain
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This paper presents a method for tracking multiple interacting deformable objects undergoing rigid m .....
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https://hal.inria.fr/hal-01889771/file/iros2018_apetit_2.pdf BibTex
titre
Stochastic Correction of Boundary Conditions during Liver Surgery
auteur
Sergei Nikolaev, Igor Peterlik, Stéphane Cotin
article
CVCS 2018 - 9th Colour and Visual Computing Symposium 2018, NTNU: Norwegian University of Science and Technology, Sep 2018, Gjovik, Norway. pp.1 - 4, ⟨10.1109/CVCS.2018.8496720⟩
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Boundary conditions play essential role in forming the predictive capacity of the biomechanical mode .....
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https://hal.inria.fr/hal-01823810/file/Online_the_9th_Colour_and_Visual_Computing_Simposium_2018.pdf BibTex
titre
A Combined Simulation & Machine Learning Approach for Image-based Force Classification during Robotized Intravitreal Injections
auteur
Andrea Mendizabal, Tatiana Fountoukidou, Jan Hermann, Raphael Sznitman, Stéphane Cotin
article
Medical Image Computing and Computer Assisted Interventions Conference, Sep 2018, Granada, Spain
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Intravitreal injection is one of the most common treatment strategies for chronic ophthalmic disease .....
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https://hal.archives-ouvertes.fr/hal-01878682/file/MICCAI2018_last_version.pdf BibTex
titre
Biomechanics-based graph matching for augmented CT-CBCT
auteur
Jaime Garcia Guevara, Igor Peterlik, Marie-Odile Berger, Stephane Cotin
article
IPCAI 2018 - 9th International Conference on Information Processing in Computer-Assisted Interventions, Jun 2018, Berlin, Germany
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Purpose: Augmenting intraoperative cone beam computed tomography (CBCT) images with preoperative com .....
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titre
Marker-based Registration for Large Deformations -Application to Open Liver Surgery
auteur
Yinoussa Adagolodjo, Nicolas Golse, Eric Vibert, Michel de Mathelin, Stéphane Cotin, Hadrien Courtecuisse
article
ICRA 2018 - International Conference on Robotics and Automation, May 2018, Brisbane, Australia
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This paper introduces an Augmented Reality (AR) system for open liver surgery. Although open surgery .....
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https://hal.inria.fr/hal-01792837/file/Icra.pdf BibTex
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titre
Automatic biomechanical graph matching CT-CBCT fusion
auteur
Jaime Garcia Garcia Guevara, Igor Peterlik, Marie-Odile Berger, Stéphane Cotin
article
Surgetica 2017, Nov 2017, Strasbourg, France
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Image-guided hepatic surgery is progressively becoming a standard for certain interventions. However .....
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https://hal.archives-ouvertes.fr/hal-01587952/file/GarciaGuevaraSurgetica2017.pdf BibTex
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titre
DejaVu: Intra-operative Simulation for Surgical Gesture Rehearsal
auteur
Nazim Haouchine, Danail Stoyanov, Frederick Roy, Stéphane Cotin
article
Medical Image Computing and Computer Assisted Interventions Conference MICCAI 2017, Oct 2017, Quebec City, Canada
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Advances in surgical simulation and surgical augmented reality have changed the way surgeons prepare .....
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https://hal.archives-ouvertes.fr/hal-01542395/file/dejavu-249.pdf BibTex
titre
Silhouette-based Pose Estimation for Deformable Organs Application to Surgical Augmented Reality
auteur
Yinoussa Adagolodjo, Raffaella Trivisonne, Nazim Haouchine, Stéphane Cotin, Hadrien Courtecuisse
article
IROS 2017 - IEEE/RSJ International Conference on Intelligent Robots and Systems, Sep 2017, Vancouver, Canada
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— In this paper we introduce a method for semi-automatic registration of 3D deformable models usin .....
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https://hal.archives-ouvertes.fr/hal-01578815/file/Iros2017%281%29.pdf BibTex
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titre
An Immersed Boundary Method for Detail-Preserving Soft Tissue Simulation from Medical Images
auteur
Christoph J Paulus, Roland Maier, Daniel Peterseim, Stéphane Cotin
article
Computational Biomechanics for Medicine, Sep 2017, Quebec, Canada
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Simulating the deformation of the human anatomy is a central element of Medical Image Computing and .....
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https://hal.inria.fr/hal-01578447/file/2017_MICCAI_workshop.pdf BibTex
titre
Image-driven Stochastic Identification of Boundary Conditions for Predictive Simulation
auteur
Igor Peterlik, Nazim Haouchine, Lukáš Ručka, Stéphane Cotin
article
20th International Conference on Medical Image Computing and Computer Assisted Intervention, Sep 2017, Québec, Canada
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In computer-aided interventions, biomechanical models reconstructed from the pre-operative data are .....
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https://hal.inria.fr/hal-01570811/file/miccai2017BCDA.pdf BibTex
titre
Real-time Error Control for Surgical Simulation
auteur
Huu Phuoc Bui, Satyendra Tomar, Hadrien Courtecuisse, Stéphane Cotin, Stéphane P A Bordas
article
BIOMECHANICS AND COMPUTER ASSISTED SURGERY MEETS MEDICAL REALITY, Aug 2017, Lille, France
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Real-time simulations are becoming increasingly common for various applications, from geometric desi .....
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https://hal.archives-ouvertes.fr/hal-01571194/file/euromech595_2017_Bui_et_al.pdf BibTex
titre
Template-based Monocular 3D Recovery of Elastic Shapes using Lagrangian Multipliers
auteur
Nazim Haouchine, Stéphane Cotin
article
Computer Vision and Pattern Recognition (CVPR), Jul 2017, Honolulu, Hawai, United States
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We present in this paper an efficient template-based method for 3D recovery of elastic shapes from a .....
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https://hal.inria.fr/hal-01524609/file/CVPR%202017%20-%20Template-based%20Monocular%203D%20Recovery%20of%20Elastic%20Shapes%20using%20Lagrangian%20Multipliers.pdf BibTex
titre
Augmented 3D Catheter Navigation using Constrained Shape from Template
auteur
Raffaella Trivisonne, Erwan Kerrien, Stéphane Cotin
article
Hamlyn Symposium, Jun 2017, London, United Kingdom
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In order to overcome the lack of depth perception in fluoroscopic images of endovascolar procedures, .....
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https://hal.inria.fr/hal-01545693/file/HSMR17_paper_58.pdf BibTex
titre
Face-based Smoothed Finite Element Method for Real-time Simulation of soft tissue
auteur
Andrea Mendizabal, Rémi Bessard Duparc, Huu Phuoc Bui, Christoph J Paulus, Igor Peterlik, Stéphane Cotin
article
SPIE Medical Imaging, Feb 2017, Orlando, United States
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In soft tissue surgery, a tumor and other anatomical structures are usually located using the preope .....
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https://hal.inria.fr/hal-01444595/file/SPIE2017.pdf BibTex
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titre
Using Contours as Boundary Conditions for Elastic Registration during Minimally Invasive Hepatic Surgery
auteur
Nazim Haouchine, Frederick Roy, Lionel Untereiner, Stéphane Cotin
article
International Conference on Intelligent Robots and Systems, Oct 2016, Daejeon, South Korea
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We address in this paper the ill-posed problem of initial alignment of pre-operative to intra-operat .....
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https://hal.inria.fr/hal-01353185/file/haouchine_iros2016.pdf BibTex
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titre
Simultaneous Pose Estimation and Augmentation of Elastic Surfaces from a Moving Monocular Camera
auteur
Nazim Haouchine, Marie-Odile Berger, Stephane Cotin
article
International Symposium on Mixed and Augmented Reality, Sep 2016, Merida, Mexico
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We present in this paper an original method to estimate the pose of a monocular camera while simulta .....
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https://hal.inria.fr/hal-01353189/file/haouchine_ISMAR2016.pdf BibTex
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titre
Segmentation and Labelling of Intra-operative Laparoscopic Images using Structure from Point Cloud
auteur
Nazim Haouchine, Stephane Cotin
article
International Symposium on Biomedical Imaging : "From Nano to Macro" (ISBI 2016), Apr 2016, Prague, Czech Republic
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We present in this paper an automatic method for segmenting and labelling of liver its surrounding t .....
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titre
3D Physics-Based Registration of 2D Dynamic MRI Data
auteur
Raffaella Trivisonne, Igor Peterlik, Stéphane Cotin, Hadrien Courtecuisse
article
MMVR - Medicine Meets Virtual Reality, Apr 2016, Los Angeles, United States
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We present a method allowing for intra-operative targeting of a specific anatomical feature. The met .....
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https://hal.inria.fr/hal-01254388/file/Trivisonne_R.pdf BibTex
titre
Framework for augmented reality in Minimally Invasive laparoscopic surgery
auteur
Bruno Marques, Rosalie Plantefeve, Frédérick Roy, Nazim Haouchine, Emmanuel Jeanvoine, Igor Peterlik, Stéphane Cotin
article
HealthCom 2015, Oct 2015, Boston, United States. ⟨10.1109/HealthCom.2015.7454467⟩
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This article presents a framework for fusing pre-operative data and intra-operative data for surgery .....
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https://hal.inria.fr/hal-01315574/file/article.pdf BibTex
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titre
Surgical Augmented Reality with Topological Changes
auteur
Christoph J. Paulus, Nazim Haouchine, David Cazier, Stéphane Cotin
article
Medical Image Computing and Computer Assisted Interventions, Oct 2015, München, Germany
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The visualization of internal structures of organs in minimally invasive surgery is an important ave .....
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https://hal.inria.fr/hal-01184498/file/2015MICCAI.pdf BibTex
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titre
Augmented Reality during Cutting and Tearing of Deformable Objects
auteur
Christoph J. Paulus, Nazim Haouchine, David Cazier, Stephane Cotin
article
The 14th IEEE International Symposium on Mixed and Augmented Reality, Sep 2015, Fukuoka, Japan. pp.6
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Current methods dealing with non-rigid augmented reality only provide an augmented view when the top .....
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https://hal.inria.fr/hal-01184495/file/2015ISMAR.pdf BibTex
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titre
Anticipation of Brain Shift in Deep Brain Stimulation Automatic Planning
auteur
Noura Hamzé, Alexandre Bilger, Christian Duriez, Stéphane Cotin, Caroline Essert
article
IEEE Engineering in Medicine and Biology Society (EMBC’15), Aug 2015, Milan, Italy. pp.3635 - 3638 ⟨10.1109/EMBC.2015.7319180⟩
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Deep Brain Stimulation is a neurosurgery procedure consisting in implanting an electrode in a deep s .....
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titre
Personalization of Cardiac Electrophysiology Model using the Unscented Kalman Filtering
auteur
Hugo Talbot, Stephane Cotin, Reza Razavi, Christopher Rinaldi, Hervé Delingette
article
Computer Assisted Radiology and Surgery (CARS 2015), Jun 2015, Barcelona, Spain
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Cardiac electrophysiology mapping techniques now allow to record denser intra-operative electrograms .....
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https://hal.inria.fr/hal-01195719/file/CARS2015-HTalbot.pdf BibTex
titre
Virtual Cutting of Deformable Objects based on Efficient Topological Operations
auteur
Christoph Paulus, Lionel Untereiner, Hadrien Courtecuisse, Stéphane Cotin, David Cazier
article
Computer Graphics International, Jun 2015, Strasbourg, France
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Virtual cutting of deformable objects is at the core of many applications in interactive simulation .....
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Book sections

titre
φ-FEM: an efficient simulation tool using simple meshes for problems in structure mechanics and heat transfer
auteur
Stéphane Cotin, Michel Duprez, Vanessa Lleras, Alexei Lozinski, Killian Vuillemot
article
Partition of Unity Methods (Wiley Series in Computational Mechanics) 1st Edition, Wiley, 2022, 978-0470667088
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One of the major issues in the computational mechanics is to take into account the geometrical compl .....
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https://hal.archives-ouvertes.fr/hal-03372733/file/main.pdf BibTex
titre
Data-driven simulation for augmented surgery
auteur
Andrea Mendizabal, Eleonora Tagliabue, Tristan Hoellinger, Jean-Nicolas Brunet, Sergei Nikolaev, Stéphane Cotin
article
Bilen Emek Abali; Ivan Giorgio. Developments and Novel Approaches in Biomechanics and Metamaterials, 132, pp.71-96, 2020, 978-3-030-50464-9. ⟨10.1007/978-3-030-50464-9⟩
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To build an augmented view of an organ during surgery, it is essential to have a biomechanical model .....
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https://hal.inria.fr/hal-02538101/file/Iconsom_manuscript_2019.pdf BibTex
titre
New applications
auteur
Bruno Arnaldi, Stéphane Cotin, Nadine Couture, Jean-Louis Dautin, Valérie Gouranton, Francois Gruson, Domitile Lourdeaux
article
Virtual Reality and Augmented Reality - Myths and Realities, chapter 1, pp.1-71, 2018, 978-1-786-30105-5. ⟨10.1002/9781119341031.ch1⟩
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This chapter gives an overview of the new families of applications that have emerged or that have un .....
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Other publications

titre
Information Processing in Computer-Assisted Interventions: 4th International Conference, 2013
auteur
Dean Barratt, Pierre Jannin, Gabor Fichtinger, Stéphane Cotin
article
2014
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Poster communications

titre
Deformed Reality: Proof of concept and preliminary results
auteur
Nazim Haouchine, Antoine Petit, Frederick Roy, Stéphane Cotin
article
ISMAR 2017 - 16th IEEE International Symposium on Mixed and Augmented Reality, Oct 2017, Nantes, France. 2017
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We introduce " Deformed Reality " , a new paradigm to interactively manipulate objects in a scene in .....
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Preprints, Working Papers, ...

titre
DeepPhysics: a physics aware deep learning framework for real-time simulation
auteur
Alban Odot, Ryadh Haferssas, Stéphane Cotin
article
2021
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Real-time simulation of elastic structures is essential in many applications, from computer-guided s .....
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https://hal.archives-ouvertes.fr/hal-03327818/file/main.pdf BibTex
titre
Simulation of soft tissue deformation in real-time using domain decomposition
auteur
Ryadh Haferssas, Pierre-Henri Tournier, Frédéric Nataf, Stéphane Cotin
article
2019
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Non-linear models used in dynamic simulations usually require the solution of multiple large and spa .....
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https://hal.archives-ouvertes.fr/hal-02400982/file/paper.pdf BibTex
titre
Constrained Stochastic State Estimation for 3D Shape Reconstruction of Catheters and Guidewires in Fluoroscopic Images
auteur
Raffaella Trivisonne, Erwan Kerrien, Stéphane Cotin
article
2019
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Minimally invasive fluoroscopy-based procedures are the gold standard for diagnosis and treatment of .....
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https://hal.archives-ouvertes.fr/hal-02072386/file/PreprintTKC.pdf BibTex