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Criteria : Author : "Marie-Dominique,Devignes; Marie-Dominique,Morch; Marie-Dominique,Morch-Devignes; Marie-Dominique,Devignes-Morch", Publication year >= "1980" to "2019"
Number of occurrences founded :
118.
- titre
- Characterization of a relaxase belonging to the MOBT family, a widespread family in Firmicutes mediating the transfer of ICEs
- auteur
- Nicolas Soler, Emilie Robert, Isaure Chauvot de Beauchêne, Philippe Monteiro, Virginie Libante, Bernard Maigret, Johan Staub, David W. Ritchie, Gérard Guédon, Sophie Payot, Marie-Dominique Devignes, Nathalie N. Leblond-Bourget
- article
- Mobile DNA, 2019, 10 (1), pp.1-16. ⟨10.1186/s13100-019-0160-9⟩
- typdoc
- Journal articles
- titre
- The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
- auteur
- Naihui Zhou, Yuxiang Jiang, Timothy Bergquist, Alexandra Lee, Balint Kacsoh, Alex Crocker, Kimberley Lewis, George Georghiou, Huy Nguyen, Md Nafiz Hamid, Larry Davis, Tunca Dogan, Volkan Atalay, Ahmet Rifaioglu, Alperen Dalkiran, Rengul Cetin Atalay, Chengxin Zhang, Rebecca Hurto, Peter Freddolino, Yang Zhang, Prajwal Bhat, Fran Supek, Jose Fernandez, Branislava Gemovic, Vladimir Perovic, Radoslav Davidović, Neven Sumonja, Nevena Veljkovic, Ehsaneddin Asgari, Mohammad R.K. Mofrad, Giuseppe Profiti, Castrense Savojardo, Pier Luigi Martelli, Rita Casadio, Florian Boecker, Heiko Schoof, Indika Kahanda, Natalie Thurlby, Alice C Mchardy, Alexandre Renaux, Rabie Saidi, Julian Gough, Alex Freitas, Magdalena Antczak, Fabio Fabris, Mark Wass, Jie Hou, Jianlin Cheng, Zheng Wang, Alfonso Romero, Alberto Paccanaro, Haixuan Yang, Tatyana Goldberg, Chenguang Zhao, Liisa Holm, Petri Törönen, Alan J. Medlar, Elaine Zosa, Itamar Borukhov, Ilya Novikov, Angela Wilkins, Olivier Lichtarge, Po-Han Chi, Wei-Cheng Tseng, Michal Linial, Peter Rose, Christophe Dessimoz, Vedrana Vidulin, Saso Dzeroski, Ian Sillitoe, Sayoni Das, Jonathan Gill Lees, David Jones, Cen Wan, Domenico Cozzetto, Rui Fa, Mateo Torres, Alex Warwick Vesztrocy, Jose Manuel Rodriguez, Michael Tress, Marco Frasca, Marco Notaro, Giuliano Grossi, Alessandro Petrini, Matteo Re, Giorgio Valentini, Marco Mesiti, Daniel S. Roche, Jonas Reeb, David Ritchie, Sabeur Aridhi, Seyed Ziaeddin Alborzi, Marie-Dominique Devignes, da Chen Emily Koo, Richard Bonneau, Vladimir Gligorijević, Meet Barot, Hai Fang, Stefano Toppo, Enrico Lavezzo, Marco Falda, Michele Berselli, Silvio C.E. Tosatto, Marco Carraro, Damiano Piovesan, Hafeez Ur Rehman, Qizhong Mao, Shanshan Zhang, Slobodan Vucetic, Gage Black, Dane Jo, Erica Suh, Jonathan Dayton, Dallas Larsen, Ashton Omdahl, Liam Mcguffin, Danielle Brackenridge, Patricia Babbitt, Jeffrey Yunes, Paolo Fontana, Feng Zhang, Shanfeng Zhu, Ronghui You, Zihan Zhang, Suyang Dai, Shuwei Yao, Weidong Tian, Renzhi Cao, Caleb Chandler, Miguel Amezola, Devon Johnson, Jia-Ming Chang, Wen-Hung Liao, Yi-Wei Liu, Stefano Pascarelli, Yotam Frank, Robert Hoehndorf, Maxat Kulmanov, Imane Boudellioua, Gianfranco Politano, Stefano Di Carlo, Alfredo Benso, Kai Hakala, Filip Ginter, Farrokh Mehryary, Suwisa Kaewphan, Jari Björne, Hans Moen, Martti E.E. Tolvanen, Tapio Salakoski, Daisuke Kihara, Aashish Jain, Tomislav Šmuc, Adrian M Altenhoff, Asa Ben-Hur, Burkhard Rost, Steven Brenner, Christine Orengo, Constance Jeffery, Giovanni Bosco, Deborah Hogan, Maria Martin, Claire O’donovan, Sean Mooney, Casey Greene, Predrag Radivojac, Iddo Friedberg
- article
- Genome Biology, 2019, 20 (1), ⟨10.1186/s13059-019-1835-8⟩
- typdoc
- Journal articles
- titre
- Blind prediction of homo‐ and hetero‐ protein complexes: The CASP13‐CAPRI experiment
- auteur
- Marc Lensink, Guillaume Brysbaert, Nurul Nadzirin, Sameer Velankar, Raphaël A.G. Chaleil, Tereza Gerguri, Paul Bates, Elodie Laine, Alessandra Carbone, Sergei Grudinin, Ren Kong, Ran‐ran Liu, Xi‐ming Xu, Hang Shi, Shan Chang, Miriam Eisenstein, Agnieszka Karczynska, Cezary Czaplewski, Emilia Lubecka, Agnieszka Lipska, Paweł Krupa, Magdalena Mozolewska, Łukasz Golon, Sergey Samsonov, Adam Liwo, Silvia Crivelli, Guillaume Pagès, Mikhail Karasikov, Maria Kadukova, Yumeng Yan, Sheng‐you Huang, Mireia Rosell, Luis Angel Rodríguez‐lumbreras, Miguel Romero‐durana, Lucía Díaz‐bueno, Juan Fernandez‐recio, Charles Christoffer, Genki Terashi, Woong‐hee Shin, Tunde Aderinwale, Sai Raghavendra Maddhuri Venkata Subram, Daisuke Kihara, Dima Kozakov, Sandor Vajda, Kathyn Porter, Dzmitry Padhorny, Israel Desta, Dmitri Beglov, Mikhail Ignatov, Sergey Kotelnikov, Iain Moal, David Ritchie, Isaure Chauvot de Beauchêne, Bernard Maigret, Marie-Dominique Devignes, Maria Elisa Ruiz Echartea, Didier Barradas‐bautista, Zhen Cao, Luigi Cavallo, Romina Oliva, Yue Cao, Yang Shen, Minkyung Baek, Taeyong Park, Hyeonuk Woo, Chaok Seok, Merav Braitbard, Lirane Bitton, Dina Scheidman‐duhovny, Justas Dapkūnas, Kliment Olechnovič, Česlovas Venclovas, Petras J. Kundrotas, Saveliy Belkin, Devlina Chakravarty, Varsha Badal, Ilya A. Vakser, Thom Vreven, Sweta Vangaveti, Tyler M. Borrman, Zhiping Weng, Johnathan D Guest, Ragul Gowthaman, Brian G Pierce, Xianjin Xu, Rui Duan, Liming Qiu, Jie Hou, Benjamin Ryan Merideth, Zhiwei Ma, Jianlin Cheng, Xiaoqin Zou, Panos Koukos, Jorge Roel‐touris, Francesco Ambrosetti, Cunliang Geng, Jörg Schaarschmidt, Mikael Trellet, Adrien S.J. Melquiond, Li Xue, Brian Jiménez‐garcía, Charlotte Noort, Rodrigo Honorato, Alexandre M.J.J. Bonvin, Shoshana J. Wodak
- article
- Proteins - Structure, Function and Bioinformatics, 2019, 87 (12), pp.1200-1221. ⟨10.1002/prot.25838⟩
- typdoc
- Journal articles
- titre
- Extended persistence of antiphospholipid antibodies beyond the twelve‐week time interval: Association with baseline antiphospholipid antibodies titres
- auteur
- Jean Devignes, Malika Smaïl-Tabbone, Alex Hervé, Geoffroy Cagninacci, Marie-Dominique Devignes, Thomas Lecompte, Stéphane Zuily, Denis Wahl
- article
- International Journal of Laboratory Hematology, 2019, 41 (6), pp.726-730. ⟨10.1111/ijlh.13094⟩
- typdoc
- Journal articles
- titre
- The ICE/IME Finder approach and its application to ICE/IME annotation in Streptococcus.
- auteur
- Charles Coluzzi, Julie Lao, Gérard Guédon, Marie-Dominique Devignes, Chloé Ambroset, Thomas Lacroix, Helene Chiapello, Sophie Payot, Nathalie N. Leblond-Bourget
- article
- 8th symposium on Antimicrobial Resistance in Animal and Environment, Jul 2019, Tours, France
- typdoc
- Conference papers
- titre
- The ICE/IME Finder approach and its application to ICE/IME annotation in Streptococcus
- auteur
- Charles Coluzzi, Julie Lao, Gérard Guédon, Marie-Dominique Devignes, Chloé Ambroset, Thomas Lacroix, Helene Chiapello, Sophie Payot, Nathalie N. Leblond-Bourget
- article
- 4th International Workshop on Streptococcus suis, Jun 2019, Montréal, Canada.
- typdoc
- Poster communications
- titre
- Computational Discovery of Direct Associations between GO terms and Protein Domains
- auteur
- Seyed Ziaeddin Alborzi, David Ritchie, Marie-Dominique Devignes
- article
- BMC Bioinformatics, 2018, 19 (Suppl 14), pp.413. ⟨10.1186/s12859-018-2380-2⟩
- typdoc
- Journal articles
- titre
- Cooperation of bio-ontologies for the classification of genetic intellectual disabilities : a diseasome approach
- auteur
- Gabin Personeni, Marie-Dominique Devignes, Malika Smaïl-Tabbone, Philippe Jonveaux, Céline Bonnet, Adrien Coulet
- article
- Proceedings of the 11th International Conference on Semantic Web Applications and Tools for Healthcare and Life Sciences (SWAT4HCLS 2018), Dec 2018, Antwerp, Belgium
- typdoc
- Conference papers
- titre
- First steps toward finding relevant pathology-gene pairs using analogy
- auteur
- Marie-Dominique Devignes, Yohann Fransot, Yves Lepage, Jean Lieber, Emmanuel Nauer, Malika Smaïl-Tabbone
- article
- EvoCBR 2018 : Workshop on Evolutionary Computation and CBR at the International Conference on Case-Based Reasoning (ICCBR 2018), Jul 2018, Stockholm, Sweden
- typdoc
- Conference papers
- titre
- Découverte d'associations entre Evénements Indésirables Médicamenteux par les structures de patrons et les ontologies
- auteur
- Gabin Personeni, Emmanuel Bresso, Marie-Dominique Devignes, Michel Dumontier, Malika Smaïl-Tabbone, Adrien Coulet
- article
- Journée I.A. et Santé, Jul 2018, Nancy, France
- typdoc
- Conference papers
- titre
- PPI DomainMiner: predicting domain-domain interactions from protein-protein interactions using tripartite graph modeling and vector similarity
- auteur
- Seyed Ziaeddin Alborzi, Sabeur Aridhi, Dave Ritchie, Marie-Dominique Devignes
- article
- ECCB 2018 - 17th European Conference on Computational Biology, Sep 2018, Athènes, Greece
- typdoc
- Poster communications
- titre
- A data science approach for exploring differential expression profiles of genes in transcriptomic studies-Application to the understanding of ageing in obese and lean rats in the FIGHT-HF project
- auteur
- Emmanuel Bresso, Claire Lacomblez, Anne Pizard, Patrick Rossignol, Faiez Zannad, Malika Smaïl-Tabbone, Marie-Dominique Devignes
- article
- JOBIM 2018 - Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2018, Marseille, France
- typdoc
- Poster communications
- titre
- ECDomainMiner: discovering hidden associations between enzyme commission numbers and Pfam domains
- auteur
- Seyed Ziaeddin Alborzi, Marie-Dominique Devignes, David W. Ritchie
- article
- BMC Bioinformatics, 2017, 18 (1), pp.107. ⟨10.1186/s12859-017-1519-x⟩
- typdoc
- Journal articles
- titre
- Low-dose alkylphenol exposure promotes mammary epithelium alterations and transgenerational developmental defects, but does not enhance tumorigenic behaviour of breast cancer cells
- auteur
- Clémence Chamard-Jovenin, Charlène Thiébaut, Amand Chesnel, Emmanuel Bresso, Chloé Morel, Malika Smaïl-Tabbone, Marie-Dominique Devignes, Taha Boukhobza, Hélène Dumond
- article
- Frontiers in Endocrinology, 2017, 8, pp.272. ⟨10.3389/fendo.2017.00272⟩
- typdoc
- Journal articles
- titre
- A Glimpse into the World of Integrative and Mobilizable Elements in Streptococci Reveals an Unexpected Diversity and Novel Families of Mobilization Proteins
- auteur
- Charles Coluzzi, Gérard Guédon, Marie-Dominique Devignes, Chloé C. Ambroset, Valentin Loux, Thomas Lacroix, Sophie Payot, Nathalie N. Leblond-Bourget
- article
- Frontiers in Microbiology, 2017, 8, pp.16. ⟨10.3389/fmicb.2017.00443⟩
- typdoc
- Journal articles
- titre
- Modeling and minimizing CAPRI round 30 symmetrical protein complexes from CASP-11 structural models
- auteur
- Marwa El Houasli, Bernard Maigret, Marie-Dominique Devignes, Anisah W Ghoorah, Sergei Grudinin, David Ritchie
- article
- Proteins: Structure, Function, and Genetics, 2017, Special Issue: Sixth Meeting on the Critical Assessment of Predicted Interactions 85 (3), pp.463-469. ⟨10.1002/prot.25182⟩
- typdoc
- Journal articles
- titre
- Discovering associations between adverse drug events using pattern structures and ontologies
- auteur
- Gabin Personeni, Emmanuel Bresso, Marie-Dominique Devignes, Michel Dumontier, Malika Smaïl-Tabbone, Adrien Coulet
- article
- Journal of Biomedical Semantics, 2017, 93, pp.539 - 546. ⟨10.1186/s13326-017-0137-x⟩
- typdoc
- Journal articles
- titre
- Validation de ER$\alpha$36 comme marqueur prédictif de susceptibilité aux nonylphénols in vivo et in vitro
- auteur
- Clémence Chamard-Jovenin, Charlène Thiébaut, Amand Chesnel, Emmanuel Bresso, Chloé Morel, Malika Smaïl-Tabbone, Marie-Dominique Devignes, Taha Boukhobza, Hélène Dumond
- article
- Journée PNR-EST de l’ANSES, Oct 2017, Paris, France
- typdoc
- Conference papers
- titre
- Automatic Generation of Functional Annotation Rules Using Inferred GO-Domain Associations
- auteur
- Seyed Ziaeddin Alborzi, Sabeur Aridhi, Marie-Dominique Devignes, Rabie Saidi, Alexandre Renaux, Maria-Jesus Martin, David W. Ritchie
- article
- Function-SIG ISMB/ECCB 2017, biofunctionprediction.org, Jul 2017, Prague, Czech Republic
- typdoc
- Conference papers
- titre
- Associating Gene Ontology Terms with Pfam Protein Domains
- auteur
- Seyed Ziaeddin Alborzi, Marie-Dominique Devignes, David Ritchie
- article
- 5th International Work-Conference on Bioinformatics and Biomedical Engineering - IWBBIO 2017, Apr 2017, Granada, Spain. pp.127-138, ⟨10.1007/978-3-319-56154-7_13⟩
- typdoc
- Conference papers
- titre
- Neighborhood-Based Label Propagation in Large Protein Graphs
- auteur
- Sabeur Aridhi, Seyed Ziaeddin Alborzi, Malika Smaïl-Tabbone, Marie-Dominique Devignes, David Ritchie
- article
- Function SIG @ ISMB/ECCB 2017, Jul 2017, Prague, Czech Republic. pp.2
- typdoc
- Poster communications
- titre
- Automatic Generation of Functional Annotation Rules Using Inferred GO-Domain Associations
- auteur
- Seyed Ziaeddin Alborzi, Marie-Dominique Devignes, Sabeur Aridhi, Rabie Saidi, Alexandre Renaux, Maria J. Martin, David W. Ritchie
- article
- Function-SIG ISMB/ECCB 2017, Jul 2017, Prague, Czech Republic. 2017
- typdoc
- Poster communications
- titre
- Prediction of homo- and hetero-protein complexes by protein docking and template-based modeling: a CASP-CAPRI experiment
- auteur
- Marc F. Lensink, Sameer Velankar, Andriy Kryshtafovych, Shen-You Huang, Dina Schneidman-Duhovy, Andrej Sali, Joan Segura, Narcis Fernandez-Fuentes, Shruthi Viswanath, Ron Elber, Sergei Grudinin, Petr Popov, Emilie Neveu, Hasup Lee, Minkyung Baek, Sangwoo Park, Lim Heo, Gyu Rie Lee, Chaok Seok, Sanbo Qin, Huan-Xiang Zhou, David W. Ritchie, Bernard Maigret, Marie-Dominique Devignes, Anisah Ghoorah, Mieczyslaw Torchala, Raphaël A.G. Chaleil, Paul A Bates, Efrat Ben-Zeev, Miriam Eisenstein, Surendra Negi S., Thom Vreven, Brian G Pierce, Tyler M. Borrman, Jinchao Yu, Françoise Ochsenbein, Zhiping Weng, Raphaël Guérois, Anna Vangone, João P.G.L.M. Rodrigues, Gydo van Zundert, Mehdi Nellen, Li Xue, Ezgi Karaca, Adrien S. J. Melquiond, Koen Visscher, Panagiotis L Kastritis, Alexandre M. J. J. Bonvin, Xianjin Xu, Liming Qiu, Chengfei Yan, Jilong Li, Zhiwei Ma, Jianlin Cheng, Xiaoqin Zou, Yang Sheng, Lenna X. Peterson, Hyung-Rae Kim, Amit Roy, Xusi Han, Juan Esquivel-Rodríguez, Daisuke Kihara, Xiaofeng Yu, Neil J. Bruce, Jonathan C. Fuller, Rebbecca C. Wade, Ivan Anishchenko, Petras J. Kundrotas, Ilya A. Vakser, Kenichiro Imai, Kazunori Yamada, Toshiyuki Oda, Tsukasa Nakamura, Kentaro Tomii, Chiara Pallara, Miguel Romero-Durana, Brian Jiménez-García, Iain H Moal, Juan Fernández-Recio, Jong Young Joung, Jong Yun Kim, Keehyoung Joo, Jooyoung Lee, Dima Kozakov, Sandor Vajda, Scott Mottarella, David R. Hall, Dmitri Beglov, Artem Mamonov, Bing Xia, Tanggis Bohnuud, Carlos A. del Carpio, Eichiro Ichiishi, Nicholas Marze, Daisuke Kuroda, Shourya S. Roy Burman, Jeffrey J Gray, Edrisse Chermak, Luigi Cavallo, Romina Oliva, Andrey Tovchigrechko, Shoshana J Wodak
- article
- Proteins - Structure, Function and Bioinformatics, 2016, Special Issue: Eleventh Meeting on the Critical Assessment of Techniques for Protein Structure Prediction, 84 (S1), pp.323-348. ⟨10.1002/prot.25007⟩
- typdoc
- Journal articles
- titre
- Kbdock - Searching and organising the structural space of protein-protein interactions
- auteur
- Marie-Dominique Devignes, Malika Smaïl-Tabbone, David Ritchie
- article
- ERCIM News, 2016, 104, pp.24-25
- typdoc
- Journal articles
- titre
- New Insights into the Classification and Integration Specificity of Streptococcus Integrative Conjugative Elements through Extensive Genome Exploration
- auteur
- Chloé C. Ambroset, Charles Coluzzi, Gérard Guédon, Marie-Dominique Devignes, Valentin Loux, Thomas Lacroix, Sophie Payot, Nathalie N. Leblond-Bourget
- article
- Frontiers in Microbiology, 2016, 6 (6), pp.1483. ⟨10.3389/fmicb.2015.01483⟩
- typdoc
- Journal articles
- titre
- Characterization of the ICESt3 relaxase active site indicates evolutionary relationship between MOBT relaxases and rolling circle replication proteins of the Rep-trans family.
- auteur
- Nicolas Soler, Philippe Monteiro, Emilie Robert, Marie-Dominique Devignes, Bernard Maigret, Dave Ritchie, Gérard Guédon, Sophie Payot, Nathalie N. Leblond-Bourget
- article
- Type IV Secretion in Gram-Negative and Gram-Positive Bacteria conference, Dec 2016, Beilngries, Germany
- typdoc
- Conference papers
- titre
- Transgenerational effects of ERalpha36 over-expression on mammary gland development and molecular phenotype: clinical perspective for breast cancer risk and therapy.
- auteur
- Clémence Chamard-Jovenin, Amand Chesnel, Emmanuel Bresso, Chloé Morel, Charlène Thiébaut, Malika Smail-Tabbone, El-Hadi Djermoune, Marie-Dominique Devignes, Taha Boukhobza, Hélène Dumond
- article
- 21st World Congress on Advances in Oncology and 19th International Symposium on Molecular Medicine, Oct 2016, Athens, Greece
- typdoc
- Conference papers
- titre
- Discovering ADE associations from EHRs using pattern structures and ontologies
- auteur
- Gabin Personeni, Marie-Dominique Devignes, Michel Dumontier, Malika Smaïl-Tabbone, Adrien Coulet
- article
- Phenotype Day, Bio-Ontologies SIG, ISMB, Jul 2016, Orlando, United States
- typdoc
- Conference papers
- titre
- Using aggregation functions on structured data: a use case in the FIGHT-HF project
- auteur
- Kevin Dalleau, Miguel Couceiro, Marie-Dominique Devignes, Chedy Raïssi, Malika Smaïl-Tabbone
- article
- International Symposium on Aggregation and Structures (ISAS 2016) , Jul 2016, Luxembourg, Luxembourg
- typdoc
- Conference papers
- titre
- Extraction d'association d'EIM à partir de dossiers patients : expérimentation avec les structures de patrons et les ontologies
- auteur
- Gabin Personeni, Marie-Dominique Devignes, Michel Dumontier, Malika Smaïl-Tabbone, Adrien Coulet
- article
- Deuxième Atelier sur l'Intelligence Artificielle et la Santé, Jun 2016, Montpellier, France
- typdoc
- Conference papers
- titre
- Long chain alkylphenol mixture promotes breast cancer initiation and progression through an ERα36-mediated mechanism
- auteur
- Clémence Chamard-Jovenin, Amand Chesnel, Chloé Morel, Marie-Dominique Devignes, Malika Smaïl-Tabbone, Taha Boukhobza, Hélène Dumond
- article
- 2nd French Workshop on Endocrine disruption in wildlife and human health, Jan 2016, Paris, France
- typdoc
- Conference papers
- titre
- Classification and Exploration of 3D Protein Domain Interactions Using Kbdock
- auteur
- Anisah W Ghoorah, Marie-Dominique Devignes, Malika Smaïl-Tabbone, David Ritchie
- article
- O. Carugo; F. Eisenhaber. Data Mining Techniques for the Life Sciences, 1415, Springer Science+Business Media New York, pp.91-105, 2016, Methods in Molecular Biology, 978-1-4939-3570-3. ⟨10.1007/978-1-4939-3572-7_5⟩
- typdoc
- Book sections
- titre
- Using Content-Based Filtering to Infer Direct Associations between the CATH, Pfam, and SCOP Domain Databases
- auteur
- Seyed Ziaeddin Alborzi, David W. Ritchie, Marie-Dominique Devignes
- article
- ECCB 2016, Sep 2016, The Hague, Netherlands
- typdoc
- Poster communications
- titre
- A glimpse into an unexplored world: very high diversity of integrative and mobilizable elements in Streptococci
- auteur
- Charles Coluzzi, Gérard Guédon, Chloé Ambroset, Marie-Dominique Devignes, Sophie Payot, Nathalie N. Leblond-Bourget
- article
- 8th ASM conference on Streptococcal Genetics, Jul 2016, Washington, United States
- typdoc
- Poster communications
- titre
- A Structure-Based Classification and Analysis of Protein Domain Family Binding Sites and Their Interactions
- auteur
- Anisah Ghoorah, Marie-Dominique Devignes, Seyed Ziaeddin Alborzi, Malika Smaïl-Tabbone, David Ritchie
- article
- Biology, 2015, 4 (2), pp.327-343. ⟨10.3390/biology4020327⟩
- typdoc
- Journal articles
- titre
- Long chain alkyphenol mixture promotes breast cancer initiation and progression through an ER$\alpha$36-mediated mechanism
- auteur
- Clémence Chamard-Jovenin, Amand Chesnel, Chloé Morel, Marie-Dominique Devignes, Malika Smaïl-Tabbone, Taha Boukobza, Hélène Dumond
- article
- 2nd International Symposium of the Cancer Research Center of Lyon, Sep 2015, Lyon, France
- typdoc
- Conference papers
- titre
- EC-PSI: Associating Enzyme Commission Numbers with Pfam Domains
- auteur
- Seyed Ziaeddin Alborzi, Marie-Dominique Devignes, David Ritchie
- article
- JOBIM 2015, Jul 2015, Clermont-Ferrand, France. ⟨10.1101/022343⟩
- typdoc
- Conference papers
- titre
- Long chain alkylphenol mixture promotes breast cancer initiation and progression through an ER36-mediated mechanism
- auteur
- Clémence Chamard-Jovenin, Amand Chesnel, Chloé Morel, Emmanuel Bresso, Marie-Dominique Devignes, Malika Smaïl-Tabbone, Taha Boukobza, Hélène Dumond
- article
- 4ème Colloque Inter-Régional Grand-Est de Recherche Translationnelle en Oncologie, Oncotrans 2015, Jun 2015, Dijon, France
- typdoc
- Conference papers
- titre
- ECCB 2014: The 13th European Conference on Computational Biology
- auteur
- Marie-Dominique Devignes, Yves Moreau
- article
- Bioinformatics, 2014, 30 (17), pp.4. ⟨10.1093/bioinformatics/btu512⟩
- typdoc
- Journal articles
- titre
- Prediction of Monomer Isomery in Florine: A Workflow Dedicated to Nonribosomal Peptide Discovery
- auteur
- Thibault Caradec, Maude Pupin, Aurélien Vanvlassenbroeck, Marie-Dominique Devignes, Malika Smaïl-Tabbone, Philippe Jacques, Valérie Leclère
- article
- PLoS ONE, 2014, 9 (1), pp.e85667. ⟨10.1371/journal.pone.0085667⟩
- typdoc
- Journal articles
- titre
- KBDOCK 2013: A spatial classification of 3D protein domain family interactions
- auteur
- Anisah Ghoorah, Marie-Dominique Devignes, Malika Smaïl-Tabbone, David Ritchie
- article
- Nucleic Acids Research, 2014, 42 (D1), pp.389-395. ⟨10.1093/nar/gkt1199⟩
- typdoc
- Journal articles
- titre
- Long chain alkylphenol mixture promotes mammary epithelial cell metaplastic phenotype through an ERalpha36-mediated mechanism.
- auteur
- Clémence Chamard, Emmanuel Bresso, Taha Boukobza, Marie-Dominique Devignes, Malika Smaïl-Tabbone, Amand Chesnel, Hélène Dumond
- article
- 8e Forum du Canceropôle Grand Est, Nov 2014, Strasbourg, France
- typdoc
- Conference papers
- titre
- ILP for Mining Linked Open Data: a biomedical Case Study
- auteur
- Gabin Personeni, Simon Daget, Céline Bonnet, Philippe Jonveaux, Marie-Dominique Devignes, Malika Smaïl-Tabbone, Adrien Coulet
- article
- The 24th International Conference on Inductive Logic Programming (ILP 2014), Sep 2014, Nancy, France
- typdoc
- Conference papers
- titre
- Mining Linked Open Data: A Case Study with Genes Responsible for Intellectual Disability
- auteur
- Gabin Personeni, Simon Daget, Céline Bonnet, Philippe Jonveaux, Marie-Dominique Devignes, Malika Smaïl-Tabbone, Adrien Coulet
- article
- Data Integration in the Life Sciences - 10th International Conference, DILS 2014, Jul 2014, Lisbon, Portugal. pp.16 - 31, ⟨10.1007/978-3-319-08590-6_2⟩
- typdoc
- Conference papers
- titre
- Long chain alkylphenol mixture promotes mammary epithelial cell metaplastic phenotype through an estrogen receptor alpha 36 mediated mechanism
- auteur
- Clémence Chamard, Emmanuel Bresso, Taha Boukhobza, Marie-Dominique Devignes, Malika Smaïl-Tabbone, Amand Chesnel, Hélène Dumond
- article
- 23rd Biennial Congress of the European Association for Cancer Research, EACR-23, Jul 2014, Munich, Germany. pp.S118, ⟨10.1016/S0959-8049(14)50435-2⟩
- typdoc
- Conference papers
- titre
- Mining Linked Open Data: a Case Study with Genes Responsible for Intellectual Disability
- auteur
- Gabin Personeni, Simon Daget, Céline Bonnet, Philippe Jonveaux, Marie-Dominique Devignes, Malika Smaïl-Tabbone, Adrien Coulet
- article
- ECCB'14 (European Conference on Computational Biology 2014), Sep 2014, Strasbourg, France. , 2014
- typdoc
- Poster communications
- titre
- Proceedings of ECCB 2014: The 13th European Conference on Computational Biology
- auteur
- Marie-Dominique Devignes
- article
- The 13th European Conference on Computational Biology, Sep 2014, Strasbourg, France. 30 (17), Oxford University Press, 2014, Bioinformatics
- typdoc
- Proceedings
- titre
- Extended spectrum of MBD5 mutations in neurodevelopmental disorders
- auteur
- Céline Bonnet, Asma Ali Khan, Emmanuel Bresso, Charlène Vigouroux, Mylène Béri, Sarah Lejczak, Bénédicte Deemer, Joris Andrieux, Christophe Philippe, Anne Moncla, Irina Giurgea, Marie-Dominique Devignes, Bruno Leheup, Philippe Jonveaux
- article
- European Journal of Human Genetics, 2013, 21 (12), pp.1457 - 1461. ⟨10.1038/ejhg.2013.22⟩
- typdoc
- Journal articles
- titre
- Protein Docking Using Case-Based Reasoning
- auteur
- Anisah Ghoorah, Marie-Dominique Devignes, Malika Smaïl-Tabbone, David Ritchie
- article
- Proteins - Structure, Function and Bioinformatics, 2013, 81 (12), pp.2150-2158. ⟨10.1002/prot.24433⟩
- typdoc
- Journal articles
- titre
- Integrative relational machine-learning for understanding drug side-effect profiles
- auteur
- Emmanuel Bresso, Renaud Grisoni, Gino Marchetti, Arnaud-Sinan Karaboga, Michel Souchet, Marie-Dominique Devignes, Malika Smaïl-Tabbone
- article
- BMC Bioinformatics, 2013, 14 (1), pp.207. ⟨10.1186/1471-2105-14-207⟩
- typdoc
- Journal articles
- titre
- Clustering optimal de gènes fondé sur une mesure de similarité sémantique
- auteur
- Rachid Hafiane, Malika Smaïl-Tabbone, Marie-Dominique Devignes, Salvatore Tabbone
- article
- 10ème édition de la COnférence en Recherche d'Information et Applications - CORIA 2013, Apr 2013, Neufchâtel, Suisse. 15 p
- typdoc
- Conference papers
- titre
- Functional classification of genes using semantic distance and fuzzy clustering approach: Evaluation with reference sets and overlap analysis
- auteur
- Marie-Dominique Devignes, Benabderrahmane Sidahmed, Malika Smail-Tabbone, Amedeo Napoli, Poch Olivier
- article
- International journal of computational biology and drug design, 2012, 5 (3/4), pp.245-260
- typdoc
- Journal articles
- titre
- Formal Concept Analysis for the Interpretation of Relational Learning applied on 3D Protein-Binding Sites
- auteur
- Emmanuel Bresso, Renaud Grisoni, Marie-Dominique Devignes, Amedeo Napoli, Malika Smail-Tabbone
- article
- 4th international conference on Knowledge Discovery and Information Retrieval - KDIR 2012, Oct 2012, Barcelona, Spain. 12 p
- typdoc
- Conference papers
- titre
- NRPS toolbox for the discovery of new nonribosomal peptides and synthetases
- auteur
- Maude Pupin, Malika Smaïl-Tabbone, Philippe Jacques, Marie-Dominique Devignes, Valérie Leclère
- article
- Journées Ouvertes en Biologie, l'Informatique et les Mathématiques - JOBIM 2012, Jul 2012, Rennes, France. pp.89-93
- typdoc
- Conference papers
- titre
- Spatial clustering of protein binding sites for template based protein docking
- auteur
- Anisah Ghoorah, Marie-Dominique Devignes, Malika Smaïl-Tabbone, David Ritchie
- article
- Bioinformatics, 2011, 27 (20), pp.2820-2827. ⟨10.1093/bioinformatics/btr493⟩
- typdoc
- Journal articles
- titre
- HIV-PDI: A Protein-Drug Interaction Resource for Structural Analyses of HIV Drug Resistance: 1. Concepts and Associated Database
- auteur
- Leo Ghemtio, Malika Smaïl-Tabbone, Appolinaire Djikeng, Marie-Dominique Devignes, Lionel Keminse, Patricia Kelbert, Joseph Fokam, Bernard Maigret, Odile Ouwe-Missi-Oukem-Boyer
- article
- Journal of Health & Medical Informatics, 2011, 2 (1), pp.1000104. ⟨10.4172/2157-7420.1000104⟩
- typdoc
- Journal articles
- titre
- Ontology-based functional classification of genes: evaluation with reference sets and overlap analysis
- auteur
- Sidahmed Benabderrahmane, Marie-Dominique Devignes, Malika Smaïl-Tabbone, Amedeo Napoli, Olivier Poch
- article
- The second workshop on Integrative Data in Systems Biology held in conjunction with the IEEE BIBM 2011 conference, Nov 2011, Atlanta, United States
- typdoc
- Conference papers
- titre
- Use of domain knowledge for dimension reduction: application to mining of drug side effects
- auteur
- Emmanuel Bresso, Sidahmed Benabderrahmane, Malika Smaïl-Tabbone, Gino Marchetti, Arnaud Sinan Karaboga, Michel Souchet, Amedeo Napoli, Marie-Dominique Devignes
- article
- International Conference on Knowledge Discovery and Information Retrieval - KDIR 2011, Oct 2011, Paris, France. pp.8
- typdoc
- Conference papers
- titre
- Benchmarking a new semantic similarity measure using fuzzy clustering and reference sets: Application to cancer expression data
- auteur
- Sidahmed Benabderrahmane, Marie-Dominique Devignes, Malika Smail-Tabbone, Olivier Poch, Amedeo Napoli, Wolfgang Raffelsberger, Dominique Guenot, Nguyen Hoan, Eric Guerin
- article
- 11ème Conférence Internationale Francophone sur l'Extraction et la Gestion des Connaissances - EGC 2011, Jan 2011, Brest, France
- typdoc
- Conference papers
- titre
- Ontology-based knowledge discovery in pharmacogenomics.
- auteur
- Adrien Coulet, Malika Smaïl-Tabbone, Amedeo Napoli, Marie-Dominique Devignes
- article
- Hamid R. Arabnia and Quoc-Nam Tran. Software Tools and Algorithms for Biological Systems, 696, Springer, pp.357-66, 2011, Advances in Experimental Medicine and Biology, 978-1-4419-7046-6. ⟨10.1007/978-1-4419-7046-6_36⟩
- typdoc
- Book sections
- titre
- IntelliGO: a new vector-based semantic similarity measure including annotation origin
- auteur
- Sidahmed Benabderrahmane, Malika Smaïl-Tabbone, Olivier Poch, Amedeo Napoli, Marie-Dominique Devignes
- article
- BMC Bioinformatics, 2010, 11, 11 (1), pp.588. ⟨10.1186/1471-2105-11-588⟩
- typdoc
- Journal articles
- titre
- Comparison of three preprocessing filters efficiency in virtual screening: identification of new putative LXR$\beta$ regulators as a test case
- auteur
- Leo Ghemtio, Marie-Dominique Devignes, Malika Smaïl-Tabbone, Michel Souchet, Vincent Leroux, Bernard Maigret
- article
- Journal of Chemical Information and Modeling, 2010, 50 (5), pp.701-715. ⟨10.1021/ci900356m⟩
- typdoc
- Journal articles
- titre
- HexServer: an FFT-based protein docking server powered by graphics processors
- auteur
- Gary Macindoe, Lazaros Mavridis, Vishwesh Venkatraman, Marie-Dominique Devignes, David Ritchie
- article
- Nucleic Acids Research, 2010, 38, pp.W445-W449. ⟨10.1093/nar/gkq311⟩
- typdoc
- Journal articles
- titre
- BioRegistry: Automatic extraction of metadata for biological database retrieval and discovery
- auteur
- Marie-Dominique Devignes, Philippe Franiatte, Nizar Messai, Emmanuel Bresso, Amedeo Napoli, Malika Smaïl-Tabbone
- article
- International Journal of Metadata, Semantics and Ontologies, 2010, 5 (3), pp.184--193. ⟨10.1504/IJMSO.2010.034043⟩
- typdoc
- Journal articles
- titre
- Using Domain Knowledge to Guide Lattice-based Complex Data Exploration
- auteur
- Nizar Messai, Marie-Dominique Devignes, Amedeo Napoli, Malika Smaïl-Tabbone
- article
- 19th European Conference on Artificial Intelligence - ECAI 2010, Aug 2010, Lisbon, Portugal. pp.847--852, ⟨10.3233/978-1-60750-606-5-847⟩
- typdoc
- Conference papers
- titre
- Connaissances de domaine et treillis de concepts pour l'exploration progressive de données complexes
- auteur
- Nizar Messai, Marie-Dominique Devignes, Amedeo Napoli, Malika Smaïl-Tabbone
- article
- 21es Journées francophones d'Ingénierie des Connaissances - IC 2010, Jun 2010, Nîmes, France. pp.233 - 244
- typdoc
- Conference papers
- titre
- Gene-Disease Relationship Discovery based on Model-driven Data Integration and Database View Definition
- auteur
- Saliha Yilmaz, Philippe Jonveaux, Cedric Bicep, Laurent Pierron, Malika Smaïl-Tabbone, Marie-Dominique Devignes
- article
- Bioinformatics, 2009, 25 (2), pp.230 - 236. ⟨10.1093/bioinformatics/btn612⟩
- typdoc
- Journal articles
- titre
- A KDD Approach for Designing Filtering Strategies to Improve Virtual Screening
- auteur
- Léo Ghemtio, Malika Smail-Tabbone, Marie-Dominique Devignes, Michel Souchet, Bernard Maigret
- article
- KDIR - International Conference on Knowledge Discovery and Information Retrieval, Oct 2009, Madeira, Portugal
- typdoc
- Conference papers
- titre
- Analyse de données transcriptomiques: Modélisation floue de profils d'expression différentielle et analyse fonctionnelle.
- auteur
- Sidahmed Benabderrahmane, Marie-Dominique Devignes, Malika Smaïl-Tabbone, O. Poch, Amedeo Napoli, N. Nguyen N.-H, W. Raffelsberger
- article
- Actes du XXVIIième congrès Informatique des Organisations et Systèmes d'information et de décision - INFORSID 2009, IRIT-Toulouse, May 2009, Toulouse, France. pp.413-428
- typdoc
- Conference papers
- titre
- Maîtriser les ressources numériques : biologie "in silico
- auteur
- Marie-Dominique Devignes, Malika Smaïl-Tabbone
- article
- Magali Roux. Biologie L'ère numérique, CNRS Editions, pp.189-222, 2009, 9782271067791
- typdoc
- Book sections
- titre
- Ontology-guided data preparation for discovering genotype-phenotype relationships
- auteur
- Adrien Coulet, Malika Smaïl-Tabbone, Pascale Benlian, Amedeo Napoli, Marie-Dominique Devignes
- article
- BMC Bioinformatics, 2008, 9 (Suppl 4), pp.S3. ⟨10.1186/1471-2105-9-S4-S3⟩
- typdoc
- Journal articles
- titre
- Multiple-step virtual screening using VSM-G: overview and validation of fast geometrical matching enrichment.
- auteur
- Alexandre Beautrait, Vincent Leroux, Matthieu Chavent, Léo Ghemtio, Marie-Dominique Devignes, Malika Smail-Tabbone, Wensheng Cai, Xuegang Shao, Gilles Moreau, Peter Bladon, Jianhua Yao, Bernard Maigret
- article
- Journal of Molecular Modeling, 2008, 14 (2), pp.135-148. ⟨10.1007/s00894-007-0257-9⟩
- typdoc
- Journal articles
- titre
- BioRegistry: Automatic Extraction of Metadata for Biological Database Retrieval and Discovery
- auteur
- Marie-Dominique Devignes, Philippe Franiatte, Nizar Messai, Amedeo Napoli, Malika Smail-Tabbone
- article
- 1st international workshop on Ressource Discovery (RED), Joint to iiWAS 2008, Nov 2008, Linz, Austria
- typdoc
- Conference papers
- titre
- Many-Valued Concept Lattices for Conceptual Clustering and Information Retrieval
- auteur
- Nizar Messai, Marie-Dominique Devignes, Amedeo Napoli, Malika Smaïl-Tabbone
- article
- 18th European Conference in Artificial Intelligence - ECAI 2008, Jul 2008, Patras, Greece. pp.127-131
- typdoc
- Conference papers
- titre
- Extending Attribute Dependencies for Lattice-Based Querying and Navigation
- auteur
- Nizar Messai, Marie-Dominique Devignes, Amedeo Napoli, Malika Smaïl-Tabbone
- article
- 16th International Conference on Conceptual Structures - ICCS 2008, Jul 2008, Toulouse, France. pp.189-202, ⟨10.1007/978-3-540-70596-3_13⟩
- typdoc
- Conference papers
- titre
- Model-driven data integration for mining protein-ligand and protein-protein interactions in a drug design context.
- auteur
- Leo Ghemtio, Emmanuel Bresso, Michel Souchet, Bernard Maigret, Malika Smaïl-Tabbone, Marie-Dominique Devignes
- article
- Journées Ouvertes Biologie Informatique Mathématiques - JOBIM 2008, Jun 2008, Lille, France
- typdoc
- Conference papers
- titre
- Ontology Refinement through Role Assertion Analysis: Example in Pharmacogenomics
- auteur
- Adrien Coulet, Malika Smail-Tabbone, Amedeo Napoli, Marie-Dominique Devignes
- article
- 21st International Workshop on Description Logics - DL2008, May 2008, Dresden, Germany
- typdoc
- Conference papers
- titre
- Correction et complétude d'un algorithme de recherche d'information par treillis de concepts
- auteur
- Nizar Messai, Marie-Dominique Devignes, Amedeo Napoli, Malika Smaïl-Tabbone
- article
- Revue des Nouvelles Technologies de l'Information, 2007
- typdoc
- Journal articles
- titre
- Workshop PC Chairs' Message. Web Data Integration for Mining in the Life Sciences (WebDIM4LS)
- auteur
- Marie-Dominique Devignes, Malika Smaïl-Tabbone
- article
- International Workshops on Web Information Systems Engineering – WISE 2007 Workshops, Dec 2007, Nancy, France. pp.3-4, ⟨10.1007/978-3-540-77010-7_1⟩
- typdoc
- Conference papers
- titre
- Traitement d'attributs inter-dépendants pour la recherche d'information par treillis
- auteur
- Nizar Messai, Marie-Dominique Devignes, Amedeo Napoli, Malika Smaïl-Tabbone
- article
- 18es Journées Francophones d'Ingénierie des Connaissances - IC 2007, Jul 2007, Grenoble, France. pp.109-120
- typdoc
- Conference papers
- titre
- Ontology-guided Data Preparation for Discovering Genotype-Phenotype Relationships
- auteur
- Adrien Coulet, Malika Smaïl-Tabbone, Pascale Benlian, Amedeo Napoli, Marie-Dominique Devignes
- article
- Network Tools and Applications in Biology: A Semantic Web for Bioinformatics - NETTAB 2007, Jun 2007, Pisa, Italy
- typdoc
- Conference papers
- titre
- A transgenic mouse model engineered to investigate human brain-derived neurotrophic factor in vivo
- auteur
- Fabrice Guillemot, Italina Cerutti, Charles Auffray, Marie-Dominique Devignes
- article
- Transgenic Research, 2006, ⟨10.1007/s11248-006-9060-0⟩
- typdoc
- Journal articles
- titre
- Effects of PPAR and RXR ligands in semaphorin 6B gene expression of human MCF-7 breast cancer cells.
- auteur
- Hossam Murad, Philippe Collet, Cecile Huin-Schohn, Nehmann Al-Makdissy, Geraldine Kerjan, Alain Chedotal, Mireille Donner, Marie-Dominique Devignes, Philippe Becuwe, Hervé Schohn, Lionel Domenjoud, Michel Dauça
- article
- International Journal of Oncology, 2006, 28, pp.977-984
- typdoc
- Journal articles
- titre
- Treillis de concepts et ontologies pour interroger l'annuaire de sources de données biologiques BioRegistry
- auteur
- Nizar Messai, Marie-Dominique Devignes, Amedeo Napoli, Malika Smaïl-Tabbone
- article
- Revue des Sciences et Technologies de l'Information - Série ISI : Ingénierie des Systèmes d'Information, 2006, Systèmes d'information spécialisés, 11 (1), pp.39-60
- typdoc
- Journal articles
- titre
- Immunoselection and characterization of a human genomic PPAR binding fragment located within POTE genes
- auteur
- Hossam Murad, Philippe Collet, Emilie Brunner, Hervé Schohn, Philippe Becuwe, Marie-Dominique Devignes, Michel Dauça, Lionel Domenjoud
- article
- Biochimie, 2006, ⟨10.1016/j.biochi.2006.09.017⟩
- typdoc
- Journal articles
- titre
- BR-Explorer: An FCA-based algorithm for Information Retrieval
- auteur
- Nizar Messai, Marie-Dominique Devignes, Amedeo Napoli, Malika Smaïl-Tabbone
- article
- Fourth International Conference On Concept Lattices and Their Applications - CLA 2006, Oct 2006, Hammamet/Tunisia
- typdoc
- Conference papers
- titre
- Suggested Ontology for Pharmacogenomics (SO-Pharm): Modular Construction and Preliminary Testing
- auteur
- Adrien Coulet, Malika Smaïl-Tabbone, Amedeo Napoli, Marie-Dominique Devignes
- article
- Proceedings of International Workshop on Knowledge Systems in Bioinformatics - KSinBIT'06, Oct 2006, Montpellier, France
- typdoc
- Conference papers
- titre
- SNP-Ontology for semantic integration of genomic variation data
- auteur
- Adrien Coulet, Malika Smaïl-Tabbone, Pascale Benlian, Amedeo Napoli, Marie-Dominique Devignes
- article
- 14th Annual International Conference on Intelligent Systems for Molecular Biology - ISMB'06, Aug 2006, Fortaleza/Brésil
- typdoc
- Conference papers
- titre
- SNP-Converter: an Ontology-Based solution to Reconcile Heterogeneous SNP Descriptions for Pharmacogenomic Studies
- auteur
- Adrien Coulet, Malika Smaïl-Tabbone, Pascale Benlian, Amedeo Napoli, Marie-Dominique Devignes
- article
- 3rd International Workshop on Data Integration in the Life Sciences 2006 - DILS'06, Jul 2006, European Bioinformatics Institute (EBI), Hinxton/UK
- typdoc
- Conference papers
- titre
- Ontology-driven Data Integration for Pharmacogenomics: Application to Genome Variations
- auteur
- Adrien Coulet, Malika Smaïl-Tabbone, Pascale Benlian, Amedeo Napoli, Marie-Dominique Devignes
- article
- Journées Ouvertes : Biologie, Informatique et Mathématiques - JOBIM'06, Centre de Bioinformatique de Bordeaux (CBiB), Jul 2006, Bordeaux/France
- typdoc
- Conference papers
- titre
- BR-Explorer: A sound and complete FCA-based retrieval algorithm (Poster)
- auteur
- Nizar Messai, Marie-Dominique Devignes, Amedeo Napoli, Malika Smaïl-Tabbone
- article
- 4th International Conference on Formal Concept Analysis - ICFCA 2006, Feb 2006, Dresden/Germany
- typdoc
- Conference papers
- titre
- Classification et interrogation de sources de données biologiques
- auteur
- Nizar Messai, Marie-Dominique Devignes, Amedeo Napoli, Malika Smaïl-Tabbone
- article
- Revue des Nouvelles Technologies de l'Information, 2005, Extraction des connaissances : Etat et perspectives, pp.43-47
- typdoc
- Journal articles
- titre
- User-designed web services to support heterogeneous biological data retrieval
- auteur
- Marie-Dominique Devignes, Hervé de Palma, Laurent Pierron, Lionel Domenjoud, Malika Smaïl-Tabbone
- article
- First International Workshop on workflows management: new abilities for the biological information overflow - NETTAB 2005, Oct 2005, Naples, Italy, pp.27-34
- typdoc
- Conference papers
- titre
- BioRegistry : a structured metadata repository for bioinformatic databases
- auteur
- Malika Smaïl-Tabbone, Shazia Osman, Nizar Messai, Amedeo Napoli, Marie-Dominique Devignes
- article
- First International Symposium on Computational Life Science - CompLife 2005, Sep 2005, Konstanz, Germany, pp.46-56
- typdoc
- Conference papers
- titre
- Querying a Bioinformatic Data Sources Registry with Concept Lattices
- auteur
- Nizar Messai, Marie-Dominique Devignes, Amedeo Napoli, Malika Smaïl-Tabbone
- article
- 3th International Conference on Conceptual Structures - ICCS 2005, Jun 2005, Kassel, Germany. pp.323-336, ⟨10.1007/11524564_22⟩
- typdoc
- Conference papers
- titre
- Treillis de concepts et ontologies pour l'interrogation d'un annuaire de sources de données biologiques (BioRegistry)
- auteur
- Nizar Messai, Marie-Dominique Devignes, Malika Smaïl-Tabbone, Amedeo Napoli
- article
- Actes du XXIIIème congrès Informatique des Organisations et Systèmes d'information et de décision - INFORSID 2005, May 2005, Grenoble/France
- typdoc
- Conference papers
- titre
- Méthode sémantique pour la classification et l'interrogation de sources de données biologiques
- auteur
- Nizar Messai, Marie-Dominique Devignes, Amedeo Napoli, Malika Smaïl-Tabbone
- article
- EGC 2005 - Atelier Modélisation des Connaissances, Jan 2005, Paris
- typdoc
- Conference papers
- titre
- Extraction de données pharmacogénomiques à partir d'études cliniques : problématique
- auteur
- Adrien Coulet, Marie-Dominique Devignes, Malika Smaïl-Tabbone
- article
- Deuxième atelier sur la "Fouille de données complexes dans un processus d'extraction des connaissances", Jan 2005, Paris/France
- typdoc
- Conference papers
- titre
- The human Semaphorin 6B gene is down regulated by PPARs
- auteur
- Philippe Collet, Lionel Domenjoud, Marie-Dominique Devignes, Hossam Murad, Hervé Schohn, Michel Dauça
- article
- Genomics, 2004, 83 (6), pp.1141-1150
- typdoc
- Journal articles
- titre
- Alternative usage of 5' exons in the chicken nerve growth factor gene: refined characterization of a weakly expressed gene
- auteur
- Odile Bertaux, Esther Toselli-Mollereau, Charles Auffray, Marie-Dominique Devignes
- article
- Gene, 2004, 334, pp.83-97
- typdoc
- Journal articles
- titre
- Integrative annotation of 21,037 human genes validated by full-length cDNA clones.
- auteur
- Tadashi Imanishi, Takeshi Itoh, Yutaka Suzuki, Claire O'Donovan, Satoshi Fukuchi, O. Koyanagi Kanako, A. Barrero Roberto, Takuro Tamura, Yumi Yamaguchi-Kabata, Motohiko Tanino, Kei Yura, Satoru Miyazaki, Kazuho Ikeo, Keiichi Homma, Arek Kasprzyk, Tetsuo Nishikawa, Mika Hirakawa, Jean Thierry-Mieg, Danielle Thierry-Mieg, Jennifer Ashurst, Libin Jia, Mitsuteru Nakao, A. Thomas, Michael, Nicola Mulder, Youla Karavidopoulou, Lihua Jin, Sangsoo Kim, Tomohiro Yasuda, Boris Lenhard, Eric Eveno, Yoshiyuki Suzuki, Jun-Ichi Takeda, Craig Gough, Phillip Hilton, Yasuyuki Fujii, Hiroaki Sakai, Susumu Tanaka, Clara Amid, Matthew Bellgard,, Maria de Fatima Bonaldo, Hidemasa Bono, K. Bromberg Susan, J. Brookes Anthony, Elspeth Bruford, Piero Carninci, Claude Chelala, Christine Couillault, J. de Souza Sandro, Marie-Anne Debily, Marie-Dominique Devignes, Inna Dubchak, Toshinori Endo, Anne Estreicher, Eduardo Eyras, Kaoru Fukami-Kobayashi, R. Gopinath Gopal, Esther Graudens, Yoonsoo Hahn, Ze-Guang Han, Michael Han, Kousuke Hanada, Hideki Hanaoka, Erimi Harada, Katsuyuki Hashimoto, Chisato Yamasaki, Ursula Hinz, Momoki Hirai, Teruyoshi Hishiki, Ian Hopkinson, Sandrine Imbeaud, Hidetoshi Inoko, Alexander Kanapin, Yayoi Kaneko, Takeya Kasukawa, Janet Kelso, Paul Kersey, Reiko Kikuno, Kouichi Kimura, Bernhard Korn, Vladimir Kuryshev, Izabela Makalowska, Takashi Makino, Shuhei Mano, Regine Mariage-Samson, Jun Mashima, Hideo Matsuda, Hans-Werner Mewes, Shinsei Minoshima, Keiichi Nagai, Hideki Nagasaki, Naoki Nagata, Rajni Nigam, Osamu Ogasawara, Osamu Ohara, Masafumi Ohtsubo, Norihiro Okada, Toshihisa Okido, Satoshi Oota, Motonori Ota, Toshio Ota, Tetsuji Otsuki, Dominique Piatier-Tonneau, Annemarie Poustka, Shuang-Xi Ren, Naruya Saitou, Katsunaga Sakai, Shigetaka Sakamoto, Ryuichi Sakate, Ingo Schupp, Florence Servant, Stephen Sherry, Rie Shiba, Sumio Sugano
- article
- PLoS Biology, 2004, 2 (6), pp.856-875
- typdoc
- Journal articles
- titre
- Intelligent access to genomic sources on the web
- auteur
- Marie-Dominique Devignes, Nizar Messai, Amedeo Napoli, Shazia Osman, Malika Smaïl-Tabbone
- article
- W3C Workshop on Semantic Web for Life Sciences, Oct 2004, Cambridge, Massachusetts USA
- typdoc
- Conference papers
- titre
- Integration of biological data from web resources : management of multiple answers through metadata retrieval
- auteur
- Marie-Dominique Devignes, Malika Smaïl-Tabbone
- article
- 12th International Conference on Intelligent Systems for Molecular Biology - 3rd European Conference on Computational Biology - ISMB-ECCB 2004, 2004, Glasgow, Scotland, United Kingdom. pp.3
- typdoc
- Conference papers
- titre
- A Generic Solution for Automated Collecting and Integration of Biological Data from Web Sources
- auteur
- Marie-Dominique Devignes, Yvan Norsa, Malika Smaïl-Tabbone, Philippe Collet, Lionel Domenjoud, Michel Dauça
- article
- European Conference on Computational Biology - ECCB'03, Sep 2003, Paris, France. pp.2
- typdoc
- Conference papers
- titre
- Collecte et intégration de données biologiques hétérogènes sur le web : application dans le domaine de la cartographie du génome humain
- auteur
- Marie-Dominique Devignes, André Schaaff, Malika Smaïl
- article
- Revue des Sciences et Technologies de l'Information - Série ISI : Ingénierie des Systèmes d'Information, 2002, 7 (1-2), pp.45-61
- typdoc
- Journal articles
- titre
- Inconsistencies between maps of human chromosome 22 correlate with increased frequency of disease-related Loci
- auteur
- Claude Chelala, Marie-Dominique Devignes, Sandrine Imbeaud, Rima Zoorob, David Cox, Charles Auffray, Emmanuel Curis, Simone Benazeth
- article
- Journal of Biological Systems, 2002, 10, pp.303-317. ⟨10.1142/S0218339002000743⟩
- typdoc
- Journal articles
- titre
- Characterization of tissue expression and full-length coding sequence of a novel human gene mapping at 3q12.1 and transcribed in oligodendrocytes.
- auteur
- Nicole-Adeline Fayein, Bernard Stankoff, Charles Auffray, Marie-Dominique Devignes
- article
- Gene, 2002, 289 (1-2), pp.119-129. ⟨10.1016/S0378-1119(02)00507-3⟩
- typdoc
- Journal articles
- titre
- Collecte de données biologiques à partir de sources multiples et hétérogènes. Vers une structure de médiation conviviale et orientée source
- auteur
- Marie-Dominique Devignes, Malika Smaïl, Nacer Boudjlida
- article
- Journées scientifiques sur le Web sémantique, J. Charlet, P. Laublet, C. Raynaud, Oct 2002, Paris, France, 5 p
- typdoc
- Conference papers
- titre
- From putative promoter sequence to genomic context : biological data collection on the web using a generic application (Xprom)
- auteur
- Marie-Dominique Devignes, Yvan Norsa, Malika Smaïl, Philippe Collet, Lionel Domenjoud
- article
- European Conference on Computational Biology - ECCB'2002. Session Posters, Sep 2002, Saarbrücken, Germany, 2 p
- typdoc
- Conference papers
- titre
- Refined localization of twenty-one genes in subregion p13.1 of human chromosome 1
- auteur
- Claude Chelala, Sandrine Imbeaud, Marie-Dominique Devignes, Rima Zoorob, Charles Auffray
- article
- Cytogenetics and Cell Genetics, 2001, 92 (3-4), pp.209-212. ⟨10.1159/000056904⟩
- typdoc
- Journal articles
- titre
- Services for a Genomics Open Distributed Environment
- auteur
- Nacer Boudjlida, Malika Smaïl-Tabbone, Marie-Dominique Devignes
- article
- XEWA'2000: IEEE Workshop on XML-Enabled Wide Area Search in Bioinformatics, 2000, League City, Texas, 2 p
- typdoc
- Conference papers
- titre
- Detailed transcript map of a 810-kb region at 11p14 involving identification of 10 novel human 3' exons
- auteur
- Fabrice Guillemot, Charles Auffray, Marie-Dominique Devignes
- article
- European Journal of Human Genetics, 1999, 7 (4), pp.487-495
- typdoc
- Journal articles
- titre
- The Genexpress IMAGE Knowledge base of human brain transcriptome : a prototype of integrated resource for functional and computational genomics
- auteur
- Geneviève Pietu, Régine Mariage-Samson, Nicole Fayein, Christiane Matingou, Eric Eveno, Rémi Houlgatte, Charles Decraene, Yves Vandenbrouck, Fariza Tahi, Marie-Dominique Devignes, Utte Wirkner, Wilhelm Ansorge, David Cox, Takahiro Nagase, Nobuo Nomura, Charles Auffray
- article
- Genome Research, 1999, 9 (2), pp.195-209
- typdoc
- Journal articles
- titre
- Querying Heterogeneous Databases : a user oriented system for collecting and structuring genome information
- auteur
- Marie-Dominique Devignes, André Schaaff, Malika Smaïl
- article
- Intelligent Systems for Molecular Biology 1999 - ISMB'99, 1999, Heidelberg, Germany, pp.30
- typdoc
- Conference papers
- titre
- Can Plant RNA Viruses Exchange Genetic Material?
- auteur
- Jean-Christophe Boyer, Marie-Dominique Morch, Anne-Lise Haenni
- article
- Evolutionary Tinkering in Gene Expression, 70 (5), Springer US, pp.175-192, 1989, ⟨10.1007/978-1-4684-5664-6_17⟩
- typdoc
- Book sections
- titre
- Overlapping open reading frames revealed by complete nucleotide sequencing of turnip yellow mosaic virus genomic RNA
- auteur
- Marie-Dominique Morch, Jean-Christophe Boyer, Anne-Lise Haenni
- article
- Nucleic Acids Research, 1988, 16 (13), pp.6157-6173. ⟨10.1093/nar/16.13.6157⟩
- typdoc
- Journal articles
- titre
- Plant viruses and new perspectives in cross-protection
- auteur
- Rosaura P.C. Valle, Jacek Skrzeczkowski, Marie-Dominique Morch, Rajiv L Joshi, Radhia Gargouri, Gabrièle Drugeon, Jean-Christophe Boyer, François Chapeville, Anne-Lise Haenni
- article
- Biochimie, 1988, 70 (5), pp.695-703. ⟨10.1016/0300-9084(88)90255-6⟩
- typdoc
- Journal articles
- titre
- Phospholipid transfer protein: full-length cDNA and amino acid sequence in maize
- auteur
- Françoise Tchang, Patrice This, Virginia Stiefel, Vincent Arondel, Marie-Dominique Morch, Montserrat Pages, Pere Puigdomenech, Françoise Grellet, Michel Delseny, Philippe Bouillon, Jean-Claude Huet, Francoise Guerbette, Françoise Beauvais-Cante, Henri Duranton, J Claude Pernollet, Jean-Claude Kader
- article
- Journal of Biological Chemistry, 1988, 263 (32), pp.16849-16855
- typdoc
- Journal articles