Publications HAL de maria, vakalopoulou

2021

Journal articles

titre: A Deep Multi-Task Learning Framework Coupling Semantic Segmentation and Fully Convolutional LSTM Networks for Urban Change Detection
auteur: Maria Papadomanolaki, Maria Vakalopoulou, Konstantinos Karantzalos
article: IEEE Transactions on Geoscience and Remote Sensing, 2021
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titre: AI-driven quantification, staging and outcome prediction of COVID-19 pneumonia
auteur: Guillaume Chassagnon, Maria Vakalopoulou, Enzo Battistella, Stergios Christodoulidis, Trieu-Nghi Hoang-Thi, Severine Dangeard, Eric Deutsch, Fabrice Andre, Enora Guillo, Nara Halm, Stefany El Hajj, Florian Bompard, Sophie Neveu, Chahinez Hani, Ines Saab, Aliénor Campredon, Hasmik Koulakian, Souhail Bennani, Gael Freche, Maxime Barat, Aurelien Lombard, Laure Fournier, Hippolyte Monnier, Téodor Grand, Jules Gregory, Yann Nguyen, Antoine Khalil, Elyas Mahdjoub, Pierre-Yves Brillet, Stéphane Tran Ba, Valérie Bousson, Ahmed Mekki, Robert-Yves Carlier, Marie-Pierre Revel, Nikos Paragios
article: Medical Image Analysis, Elsevier, 2021, 67, pp.101860. ⟨10.1016/j.media.2020.101860⟩
DOI: DOI : 10.1016/j.media.2020.101860
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titre: Elastic Registration–driven Deep Learning for Longitudinal Assessment of Systemic Sclerosis Interstitial Lung Disease at CT
auteur: Guillaume Chassagnon, Maria Vakalopoulou, Alexis Régent, Mihir Sahasrabudhe, Rafael Marini, Trieu-Nghi Hoang-Thi, Anh-Tuan Dinh-Xuan, Bertrand Dunogué, Luc Mouthon, Nikos Paragios, Marie-Pierre Revel
article: Radiology, Radiological Society of North America, 2021, 298 (1), pp.189-198. ⟨10.1148/radiol.2020200319⟩
DOI: DOI : 10.1148/radiol.2020200319
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Conference papers

titre: 3D Unsupervised Kidney Graft Segmentation Based on Deep Learning and Multi-Sequence MRI
auteur: Leo Milecki, Sylvain Bodard, Jean-Michel Correas, Marc-Olivier Timsit, Maria Vakalopoulou
article: International Symposium on Biomedical Imaging 2021, Apr 2021, Nice, France
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2020

Journal articles

titre: Radiomics to predict outcomes and abscopal response of patients with cancer treated with immunotherapy combined with radiotherapy using a validated signature of CD8 cells
auteur: Roger Sun, Nora Sundahl, Markus Hecht, Florian Putz, Andrea Lancia, Angela Rouyar, Marina Milic, Alexandre Carré, Enzo Battistella, Emilie Alvarez Andres, Stéphane Niyoteka, Edouard Romano, Guillaume Louvel, Jérôme Durand-Labrunie, Sophie Bockel, Rastilav Bahleda, Charlotte Robert, Celine Boutros, Maria Vakalopoulou, Nikos Paragios, Benjamin Frey, Jean-Charles Soria, Christophe Massard, Charles Ferté, Rainer Fietkau, Piet Ost, Udo Gaipl, Eric Deutsch
article: Journal for Immunotherapy of Cancer, BMJ Publishing Group 2020, 8 (2), pp.e001429. ⟨10.1136/jitc-2020-001429⟩
DOI: DOI : 10.1136/jitc-2020-001429
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titre: Standardization of brain MR images across machines and protocols: bridging the gap for MRI-based radiomics
auteur: Alexandre Carré, Guillaume Klausner, Myriam Edjlali, Marvin Lerousseau, Jade Briend-Diop, Roger Sun, Samy Ammari, Sylvain Reuzé, Emilie Alvarez Andres, Théo Estienne, Stéphane Niyoteka, Enzo Battistella, Maria Vakalopoulou, Frédéric Dhermain, Nikos Paragios, Eric Deutsch, Catherine Oppenheim, Johan Pallud, Charlotte Robert
article: Scientific Reports, Nature Publishing Group, 2020, 10 (1), pp.12340. ⟨10.1038/s41598-020-69298-z⟩
DOI: DOI : 10.1038/s41598-020-69298-z
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titre: Deep Learning–based Approach for Automated Assessment of Interstitial Lung Disease in Systemic Sclerosis on CT Images
auteur: Guillaume Chassagnon, Maria Vakalopoulou, Alexis Régent, Evangelia Zacharaki, Galit Aviram, Charlotte Martin, Rafael Marini, Norbert Bus, Naïm Jerjir, Arsène Mekinian, Thông Hua-Huy, Laurence Monnier-Cholley, Nouria Benmostefa, Luc Mouthon, Anh-Tuan Dinh-Xuan, Nikos Paragios, Marie-Pierre Revel
article: Radiology: Artificial Intelligence, RSNA, 2020, 2 (4), pp.e190006. ⟨10.1148/ryai.2020190006⟩
DOI: DOI : 10.1148/ryai.2020190006
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titre: Deep Learning-Based Concurrent Brain Registration and Tumor Segmentation
auteur: Théo Estienne, Marvin Lerousseau, Maria Vakalopoulou, Emilie Andres, Enzo Battistella, Alexandre Carré, Siddhartha Chandra, Stergios Christodoulidis, Mihir Sahasrabudhe, Roger Sun, Charlotte Robert, Hugues Talbot, Nikos Paragios, Eric Deutsch
article: Frontiers in Computational Neuroscience, Frontiers, 2020, Multimodal Brain Tumor Segmentation and Beyond, ⟨10.3389/fncom.2020.00017⟩
DOI: DOI : 10.3389/fncom.2020.00017
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titre: Artificial intelligence applications for thoracic imaging
auteur: Guillaume Chassagnon, Maria Vakalopoulou, Nikos Paragios, Marie-Pierre Revel
article: European Journal of Radiology, Elsevier, 2020, 123, pp.108774. ⟨10.1016/j.ejrad.2019.108774⟩
DOI: DOI : 10.1016/j.ejrad.2019.108774
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Conference papers

titre: Weakly Supervised Multiple Instance Learning Histopathological Tumor Segmentation
auteur: Marvin Lerousseau, Maria Vakalopoulou, Marion Classe, Julien Adam, Enzo Battistella, Alexandre Carré, Théo Estienne, Théophraste Henry, Eric Deutsch, Nikos Paragios
article: MICCAI 2020 - Medical Image Computing and Computer Assisted Intervention, Oct 2020, Lima, Peru. pp.470-479, ⟨10.1007/978-3-030-59722-1_45⟩
DOI: DOI : 10.1007/978-3-030-59722-1_45
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Directions of work or proceedings

titre: Self-supervised Nuclei Segmentation in Histopathological Images Using Attention
auteur: Mihir Sahasrabudhe, Stergios Christodoulidis, Roberto Salgado, Stefan Michiels, Sherene Loi, Fabrice André, Nikos Paragios, Maria Vakalopoulou
article: MICCAI 2020 - 23rd International Conference on Medical Image Computing and Computer Assisted Intervention, Oct 2020, Lima, Peru. pp.393-402, 2020, ⟨10.1007/978-3-030-59722-1_38⟩
DOI: DOI : 10.1007/978-3-030-59722-1_38
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Preprints, Working Papers, ...

titre: Deep Multi-Instance Learning Using Multi-Modal Data for Diagnosis of Lymphocytosis
auteur: Mihir Sahasrabudhe, Pierre Sujobert, Evangelia Zacharaki, Eugénie Maurin, Béatrice Grange, Laurent Jallades, Nikos Paragios, Maria Vakalopoulou
article: 2020
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titre: Deep learning based registration using spatial gradients and noisy segmentation labels
auteur: Théo Estienne, Maria Vakalopoulou, Enzo Battistella, Alexandre Carré, Théophraste Henry, Marvin Lerousseau, Charlotte Robert, Nikos Paragios, Eric Deutsch
article: 2020
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2019

Journal articles

titre: Deep learning: definition and perspectives for thoracic imaging
auteur: Maria Vakalopoulou, Guillaume Chassagnon, Nikos Paragios, Marie-Pierre Revel
article: European Radiology, Springer Verlag, 2019, ⟨10.1007/s00330-019-06564-3⟩
DOI: DOI : 10.1007/s00330-019-06564-3
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titre: Use of Elastic Registration in Pulmonary MRI for the Assessment of Pulmonary Fibrosis in Patients with Systemic Sclerosis
auteur: Guillaume Chassagnon, Charlotte Martin, Rafael Marini, Maria Vakalopoulou, Alexis Régent, Luc Mouthon, Nikos Paragios, Marie-Pierre Revel
article: Radiology, Radiological Society of North America, 2019, 291 (2), pp.487-492. ⟨10.1148/radiol.2019182099⟩
DOI: DOI : 10.1148/radiol.2019182099
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titre: A Novel Object-Based Deep Learning Framework for Semantic Segmentation of Very High-Resolution Remote Sensing Data: Comparison with Convolutional and Fully Convolutional Networks
auteur: Maria Papadomanolaki, Maria Vakalopoulou, Konstantinos Karantzalos
article: Remote Sensing, MDPI, 2019, 11 (6), pp.684. ⟨10.3390/rs11060684⟩
DOI: DOI : 10.3390/rs11060684
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Conference papers

titre: U-ReSNet: Ultimate Coupling of Registration and Segmentation with Deep Nets
auteur: Théo Estienne, Maria Vakalopoulou, Stergios Christodoulidis, Enzo Battistella, Marvin Lerousseau, Alexandre Carre, Guillaume Klausner, Roger Sun, Charlotte Robert, Stavroula Mougiakakou, Nikos Paragios, Eric Deutsch
article: MICCAI 2019: Medical Image Computing and Computer Assisted Intervention – MICCAI 2019, MICCAI, Oct 2019, Shenzhen, China. pp.310-319, ⟨10.1007/978-3-030-32248-9_35⟩
DOI: DOI : 10.1007/978-3-030-32248-9_35
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titre: Detecting urban changes with recurrent neural networks from multitemporal Sentinel-2 data
auteur: Maria Papadomanolaki, Sagar Verma, Maria Vakalopoulou, Siddharth Gupta, Konstantinos Karantzalos
article: IGARSS 2019 - IEEE International Geoscience and Remote Sensing Symposium, Jul 2019, Yokohama, Japan
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titre: A multi-task deep learning framework coupling semantic segmentation and image reconstruction for very high resolution imagery
auteur: Maria Papadomanolaki, Konstantinos Karantzalos, Maria Vakalopoulou
article: IGARSS 2019 - IEEE International Geoscience and Remote Sensing Symposium, Jul 2019, Yokohama, Japan
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titre: Image Registration of Satellite Imagery with Deep Convolutional Neural Networks
auteur: Maria Vakalopoulou, Stergios Christodoulidis, Mihir Sahasrabudhe, Stavroula Mougiakakou, Nikos Paragios
article: IGARSS 2019 - 2019 IEEE International Geoscience and Remote Sensing Symposium, Jul 2019, Yokohama, France. pp.4939-4942, ⟨10.1109/IGARSS.2019.8898220⟩
DOI: DOI : 10.1109/IGARSS.2019.8898220
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titre: Gene Expression High-Dimensional Clustering towards a Novel, Robust, Clinically Relevant and Highly Compact Cancer Signature
auteur: Enzo Battistella, Maria Vakalopoulou, Théo Estienne, Marvin Lerousseau, Roger Sun, Charlotte Robert, Nikos Paragios, Eric Deutsch
article: IWBBIO 2019 - 7th International Work-Conference on Bioinformatics and Biomedical Engineering, May 2019, Granada, Spain
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2018

Journal articles

titre: A radiomics approach to assess tumour-infiltrating CD8 cells and response to anti-PD-1 or anti-PD-L1 immunotherapy: an imaging biomarker, retrospective multicohort study
auteur: Roger Sun, Elaine Johanna Limkin, Maria Vakalopoulou, Laurent Dercle, Stéphane Champiat, Shan Rong Han, Loic Verlingue, David Brandao, Andrea Lancia, Samy Ammari, Antoine Hollebecque, Jean-Yves Scoazec, Aurélien Marabelle, Christophe Massard, Jean-Charles Soria, Charlotte Robert, Nikos Paragios, Éric Deutsch, Charles Ferté
article: Lancet Oncology, Elsevier, 2018, ⟨10.1016/S1470-2045(18)30413-3⟩
DOI: DOI : 10.1016/S1470-2045(18)30413-3
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titre: Demystification of AI-driven medical image interpretation: past, present and future
auteur: Peter Savadjiev, Jaron Chong, Anthony Dohan, Maria Vakalopoulou, Caroline Reinhold, Nikos Paragios, Benoit Gallix
article: European Radiology, Springer Verlag, 2018, ⟨10.1007/s00330-018-5674-x⟩
DOI: DOI : 10.1007/s00330-018-5674-x
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titre: Detailed Land Cover Mapping from Multitemporal Landsat-8 Data of Different Cloud Cover
auteur: Christina Karakizi, Konstantinos Karantzalos, Maria Vakalopoulou, Georgia Antoniou
article: Remote Sensing, MDPI, 2018, 10 (8), ⟨10.3390/rs10081214⟩
DOI: DOI : 10.3390/rs10081214
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Conference papers

titre: Linear and Deformable Image Registration with 3D Convolutional Neural Networks
auteur: Stergios Christodoulidis, Mihir Sahasrabudhe, Maria Vakalopoulou, Guillaume Chassagnon, Marie-Pierre Revel, Stavroula Mougiakakou, Nikos Paragios
article: Reconstruction and Analysis of Moving Body Organs, 21th International Conference on Medical Image Computing and Computer Assisted Intervention 2018, Sep 2018, Grenada, Spain
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titre: Context Aware 3D CNNs for Brain Tumor Segmentation
auteur: Siddhartha Chandra, Maria Vakalopoulou, Lucas Fidon, Enzo Battistella, Théo Estienne, Roger Sun, Charlotte Robert, Eric Deutsch, Nikos Paragios
article: MICCAI Brainlesion Workshop, Sep 2018, Granada, Spain
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titre: AtlasNet: Multi-atlas Non-linear Deep Networks for Medical Image Segmentation
auteur: Maria Vakalopoulou, Guillaume Chassagnon, Norbert Bus, Rafael Marini Silva, Evangelia Zacharaki, Marie-Pierre Revel, Nikos Paragios
article: International Conference on Medical Image Computing and Computer-Assisted Intervention, Sep 2018, Granada, Spain
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titre: Stacked Encoder-Decoders for Accurate Semantic Segmentation of Very High Resolution Satellite Datasets
auteur: Maria Papadomanolaki, Maria Vakalopoulou, Nikos Paragios, Konstantinos Karantzalos
article: IGARSS 2018 - 38th annual International Geoscience and Remote Sensing Symposium, Jul 2018, Valencia, Spain. pp.1-4
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titre: Deep patch-based priors under a fully convolutional encoder-decoder architecture for interstitial lung disease segmentation
auteur: Maria Vakalopoulou, Guillaume Chassagnon, Nikos Paragios, Marie-Pierre Revel, Evangelia Zacharaki
article: ISBI’18 - IEEE International Symposium on Biomedical Imaging, Apr 2018, Washington, D.C., United States
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Preprints, Working Papers, ...

titre: Identifying the Best Machine Learning Algorithms for Brain Tumor Segmentation, Progression Assessment, and Overall Survival Prediction in the BRATS Challenge
auteur: Spyridon Bakas, Mauricio Reyes, Enzo Battistella, Siddhartha Chandra, Théo Estienne, Lucas Fidon, Maria Vakalopoulou, Roger Sun, Et Al., Éric Deutsch, Charlotte Robert, Nikos Paragios, Bjoern Menze
article: 2018
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2017

Conference papers

titre: Integrating edge/boundary priors with classification scores for building detection in very high resolution data
auteur: Maria Vakalopoulou, Norbert Bus, Konstantinos Karantzalos, Nikos Paragios
article: IEEE International geoscience and remote sensing symposium (IGARSS), Jul 2017, Fort Worth, TX, United States. pp.3309-3312, ⟨10.1109/IGARSS.2017.8127705⟩
DOI: DOI : 10.1109/IGARSS.2017.8127705
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titre: Per city-block, density estimation at build-up areas from aerial RGB imagery with deep learning
auteur: Theodosia Vardoulaki, Maria Vakalopoulou, Konstantinos Karantzalos
article: Joint Urban Remote Sensing Event (JURSE), Mar 2017, Dubai, United Arab Emirates. ⟨10.1109/JURSE.2017.7924605⟩
DOI: DOI : 10.1109/JURSE.2017.7924605
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titre: Patch-based deep learning architectures for sparse annotated very high resolution datasets
auteur: Maria Papadomanolaki, Maria Vakalopoulou, Konstantinos Karantzalos
article: Joint Urban Remote Sensing Event (JURSE), Mar 2017, Dubai, United Arab Emirates. ⟨10.1109/JURSE.2017.7924538⟩
DOI: DOI : 10.1109/JURSE.2017.7924538
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2016

Journal articles

titre: Graph-Based Registration, Change Detection, and Classification in Very High Resolution Multitemporal Remote Sensing Data
auteur: Maria Vakalopoulou, Konstantinos Karantzalos, Nikos Komodakis, Nikos Paragios
article: IEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensing, IEEE, 2016, 9, pp.2940 - 2951. ⟨10.1109/JSTARS.2016.2557081⟩
DOI: DOI : 10.1109/JSTARS.2016.2557081
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Conference papers

titre: Simultaneous registration, segmentation and change detection from multisensor, multitemporal satellite image pairs.
auteur: Maria Vakalopoulou, Christos Platias, Maria Papadomanolaki, Nikos Paragios, Konstantinos Karantzalos
article: International Geoscience and Remote Sensing Symposium (IGARSS), Jul 2016, Beijing, China. ⟨10.1109/IGARSS.2016.7729469⟩
DOI: DOI : 10.1109/IGARSS.2016.7729469
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2015

Conference papers

titre: Building detection in very high resolution multispectral data with deep learning features
auteur: Maria Vakalopoulou, Konstantinos Karantzalos, Nikos Komodakis, Nikos Paragios
article: Geoscience and Remote Sensing Symposium (IGARSS), 2015 IEEE International, Jul 2015, Milan, Italy. pp.1873-1876, ⟨10.1109/IGARSS.2015.7326158⟩
DOI: DOI : 10.1109/IGARSS.2015.7326158
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titre: Simultaneous Registration and Change Detection in Multitemporal, Very High Resolution Remote Sensing Data
auteur: Maria Vakalopoulou, Konstantinos Karatzalos, Nikos Komodakis, Nikos Paragios
article: 2015 IEEE Conference on Computer Vision and Pattern Recognition Workshops (CVPRW), Jun 2015, Boston, United States. pp.61-69, ⟨10.1109/CVPRW.2015.7301384⟩
DOI: DOI : 10.1109/CVPRW.2015.7301384
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