Publications HAL de nikos, paragios

2020

Journal articles

titre: Artificial intelligence applications for thoracic imaging
auteur: Guillaume Chassagnon, Maria Vakalopoulou, Nikos Paragios, Marie-Pierre Revel
article: European Journal of Radiology, Elsevier, 2020, 123, pp.108774. ⟨10.1016/j.ejrad.2019.108774⟩
DOI: DOI : 10.1016/j.ejrad.2019.108774
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2019

Journal articles

titre: Deep learning: definition and perspectives for thoracic imaging
auteur: Maria Vakalopoulou, Guillaume Chassagnon, Nikos Paragios, Marie-Pierre Revel
article: European Radiology, Springer Verlag, 2019, ⟨10.1007/s00330-019-06564-3⟩
DOI: DOI : 10.1007/s00330-019-06564-3
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titre: Use of Elastic Registration in Pulmonary MRI for the Assessment of Pulmonary Fibrosis in Patients with Systemic Sclerosis
auteur: Guillaume Chassagnon, Charlotte Martin, Rafael Marini, Maria Vakalopoulou, Alexis Régent, Luc Mouthon, Nikos Paragios, Marie-Pierre Revel
article: Radiology, Radiological Society of North America, 2019, 291 (2), pp.487-492. ⟨10.1148/radiol.2019182099⟩
DOI: DOI : 10.1148/radiol.2019182099
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Conference papers

titre: U-ReSNet: Ultimate Coupling of Registration and Segmentation with Deep Nets
auteur: Théo Estienne, Maria Vakalopoulou, Stergios Christodoulidis, Enzo Battistella, Marvin Lerousseau, Alexandre Carre, Guillaume Klausner, Roger Sun, Charlotte Robert, Stavroula Mougiakakou, Nikos Paragios, Eric Deutsch
article: MICCAI 2019: Medical Image Computing and Computer Assisted Intervention – MICCAI 2019, MICCAI, Oct 2019, Shenzhen, China. pp.310-319, ⟨10.1007/978-3-030-32248-9_35⟩
DOI: DOI : 10.1007/978-3-030-32248-9_35
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titre: Image Registration of Satellite Imagery with Deep Convolutional Neural Networks
auteur: Maria Vakalopoulou, Stergios Christodoulidis, Mihir Sahasrabudhe, Stavroula Mougiakakou, Nikos Paragios
article: IGARSS 2019 - 2019 IEEE International Geoscience and Remote Sensing Symposium, Jul 2019, Yokohama, France. pp.4939-4942, ⟨10.1109/IGARSS.2019.8898220⟩
DOI: DOI : 10.1109/IGARSS.2019.8898220
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titre: Gene Expression High-Dimensional Clustering towards a Novel, Robust, Clinically Relevant and Highly Compact Cancer Signature
auteur: Enzo Battistella, Maria Vakalopoulou, Théo Estienne, Marvin Lerousseau, Roger Sun, Charlotte Robert, Nikos Paragios, Eric Deutsch
article: IWBBIO 2019 - 7th International Work-Conference on Bioinformatics and Biomedical Engineering, May 2019, Granada, Spain
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Book sections

titre: Tighter continuous relaxations for MAP inference in discrete MRFs: A survey
auteur: Hariprasad Kannan, Nikos Komodakis, Nikos Paragios
article: Handbook of Numerical Analysis: Processing, Analyzing and Learning of Images, Shapes, and Forms: Part 2, Volume 20, pages 351 - 400, Elsevier, https://www.sciencedirect.com/science/article/pii/S1570865919300092, Elsevier, 2019, ⟨10.1016/bs.hna.2019.06.001⟩
DOI: DOI : 10.1016/bs.hna.2019.06.001
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2018

Journal articles

titre: A radiomics approach to assess tumour-infiltrating CD8 cells and response to anti-PD-1 or anti-PD-L1 immunotherapy: an imaging biomarker, retrospective multicohort study
auteur: Roger Sun, Elaine Johanna Limkin, Maria Vakalopoulou, Laurent Dercle, Stéphane Champiat, Shan Rong Han, Loic Verlingue, David Brandao, Andrea Lancia, Samy Ammari, Antoine Hollebecque, Jean-Yves Scoazec, Aurélien Marabelle, Christophe Massard, Jean-Charles Soria, Charlotte Robert, Nikos Paragios, Éric Deutsch, Charles Ferté
article: Lancet Oncology, Elsevier, 2018, ⟨10.1016/S1470-2045(18)30413-3⟩
DOI: DOI : 10.1016/S1470-2045(18)30413-3
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titre: Demystification of AI-driven medical image interpretation: past, present and future
auteur: Peter Savadjiev, Jaron Chong, Anthony Dohan, Maria Vakalopoulou, Caroline Reinhold, Nikos Paragios, Benoit Gallix
article: European Radiology, Springer Verlag, 2018, ⟨10.1007/s00330-018-5674-x⟩
DOI: DOI : 10.1007/s00330-018-5674-x
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titre: Graph-Based Slice-to-Volume Deformable Registration
auteur: Enzo Ferrante, Nikos Paragios
article: International Journal of Computer Vision, Springer Verlag, 2018, 126 (1), pp.36-58. ⟨10.1007/s11263-017-1040-8⟩
DOI: DOI : 10.1007/s11263-017-1040-8
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Conference papers

titre: Context Aware 3D CNNs for Brain Tumor Segmentation
auteur: Siddhartha Chandra, Maria Vakalopoulou, Lucas Fidon, Enzo Battistella, Théo Estienne, Roger Sun, Charlotte Robert, Eric Deutsch, Nikos Paragios
article: MICCAI Brainlesion Workshop, Sep 2018, Granada, Spain
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titre: AtlasNet: Multi-atlas Non-linear Deep Networks for Medical Image Segmentation
auteur: Maria Vakalopoulou, Guillaume Chassagnon, Norbert Bus, Rafael Marini Silva, Evangelia Zacharaki, Marie-Pierre Revel, Nikos Paragios
article: International Conference on Medical Image Computing and Computer-Assisted Intervention, Sep 2018, Granada, Spain
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titre: Linear and Deformable Image Registration with 3D Convolutional Neural Networks
auteur: Stergios Christodoulidis, Mihir Sahasrabudhe, Maria Vakalopoulou, Guillaume Chassagnon, Marie-Pierre Revel, Stavroula Mougiakakou, Nikos Paragios
article: Reconstruction and Analysis of Moving Body Organs, 21th International Conference on Medical Image Computing and Computer Assisted Intervention 2018, Sep 2018, Grenada, Spain
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titre: Deforming Autoencoders: Unsupervised Disentangling of Shape and Appearance
auteur: Zhixin Shu, Mihir Sahasrabudhe, Rıza Güler, Dimitris Samaras, Nikos Paragios, Iasonas Kokkinos
article: The European Conference on Computer Vision, Sep 2018, Munich, Germany
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titre: Stacked Encoder-Decoders for Accurate Semantic Segmentation of Very High Resolution Satellite Datasets
auteur: Maria Papadomanolaki, Maria Vakalopoulou, Nikos Paragios, Konstantinos Karantzalos
article: IGARSS 2018 - 38th annual International Geoscience and Remote Sensing Symposium, Jul 2018, Valencia, Spain. pp.1-4
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titre: Continuous Relaxation of MAP Inference: A Nonconvex Perspective
auteur: D. Khuê Lê-Huu, Nikos Paragios
article: CVPR 2018 - IEEE Conference on Computer Vision and Pattern Recognition, Jun 2018, Salt Lake City, United States. pp.1-19, ⟨10.1109/CVPR.2018.00580⟩
DOI: DOI : 10.1109/CVPR.2018.00580
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titre: Deep patch-based priors under a fully convolutional encoder-decoder architecture for interstitial lung disease segmentation
auteur: Maria Vakalopoulou, Guillaume Chassagnon, Nikos Paragios, Marie-Pierre Revel, Evangelia Zacharaki
article: ISBI’18 - IEEE International Symposium on Biomedical Imaging, Apr 2018, Washington, D.C., United States
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Preprints, Working Papers, ...

titre: Identifying the Best Machine Learning Algorithms for Brain Tumor Segmentation, Progression Assessment, and Overall Survival Prediction in the BRATS Challenge
auteur: Spyridon Bakas, Mauricio Reyes, Enzo Battistella, Siddhartha Chandra, Théo Estienne, Lucas Fidon, Maria Vakalopoulou, Roger Sun, Et Al., Éric Deutsch, Charlotte Robert, Nikos Paragios, Bjoern Menze
article: 2018
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2017

Journal articles

titre: Imagerie médicale computationnelle (radiomique) et potentiel en immuno-oncologie
auteur: Roger Sun, Elaine Limkin, Laurent Dercle, Sylvain Reuzé, Evangelia Zacharaki, Cyrus Chargari, Antoine Schernberg, Anne-Sophie Dirand, Anthony Alexis, Nikos Paragios, Eric Deutsch, Charles Ferté, Charlotte Robert
article: Cancer Radiothérapie, Elsevier Masson, 2017, 21 (6-7), pp.648-654. ⟨10.1016/j.canrad.2017.07.035⟩
DOI: DOI : 10.1016/j.canrad.2017.07.035
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titre: Slice-to-volume medical image registration: A survey
auteur: Enzo Ferrante, Nikos Paragios
article: Medical Image Analysis, Elsevier, 2017, 39, pp.101 - 123. ⟨10.1016/j.media.2017.04.010⟩
DOI: DOI : 10.1016/j.media.2017.04.010
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titre: Promises and challenges for the implementation of computational medical imaging (radiomics) in oncology
auteur: Elaine Limkin, Roger Sun, Laurent Dercle, Evangelia Zacharaki, Charlotte Robert, Sylvain Reuzé, Antoine Schernberg, Nikos Paragios, Eric Deutsch, Charles Ferté
article: Annals of Oncology, Oxford University Press (OUP), 2017, 28 (6), pp.1191 - 1206. ⟨10.1093/annonc/mdx034⟩
DOI: DOI : 10.1093/annonc/mdx034
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titre: A Discrete MRF Framework for Integrated Multi-Atlas Registration and Segmentation
auteur: Stavros Alchatzidis, Aristeidis Sotiras, Evangelia I. Zacharaki, Nikos Paragios
article: International Journal of Computer Vision, Springer Verlag, 2017, ⟨10.1007/s11263-016-0925-2⟩
DOI: DOI : 10.1007/s11263-016-0925-2
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titre: Automatic single- and multi-label enzymatic function prediction by machine learning
auteur: Shervine Amidi, Afshine Amidi, Dimitrios Vlachakis, Nikos Paragios, Evangelia I. Zacharaki
article: PeerJ, PeerJ, 2017, 5, pp.1-16. ⟨10.7717/peerj.3095⟩
DOI: DOI : 10.7717/peerj.3095
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Conference papers

titre: Deformable Registration through Learning of Context-Specific Metric Aggregation
auteur: Enzo Ferrante, Puneet K Dokania, Rafael Marini, Nikos Paragios
article: Machine Learning in Medical Imaging Worlshop. MLMI (MICCAI 2017), Sep 2017, Quebec City, Canada
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titre: Integrating edge/boundary priors with classification scores for building detection in very high resolution data
auteur: Maria Vakalopoulou, Norbert Bus, Konstantinos Karantzalos, Nikos Paragios
article: IEEE International geoscience and remote sensing symposium (IGARSS), Jul 2017, Fort Worth, TX, United States. pp.3309-3312, ⟨10.1109/IGARSS.2017.8127705⟩
DOI: DOI : 10.1109/IGARSS.2017.8127705
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titre: Newton-type Methods for Inference in Higher-Order Markov Random Fields
auteur: Hariprasad Kannan, Nikos Komodakis, Nikos Paragios
article: IEEE International Conference on Computer Vision and Pattern Recognition, Jul 2017, Honolulu, United States. pp.7224 - 7233
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titre: Alternating Direction Graph Matching
auteur: D. Khuê Lê-Huu, Nikos Paragios
article: IEEE Conference on Computer Vision and Pattern Recognition (CVPR), Jul 2017, Honolulu, United States
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2016

Journal articles

titre: Higher-order Graph Principles towards Non-rigid Surface Registration
auteur: Yun Zeng, Chaohui Wang, Xianfeng Gu, Dimitris Samaras, Nikos Paragios
article: IEEE Transactions on Pattern Analysis and Machine Intelligence, Institute of Electrical and Electronics Engineers, 2016, 38 (12), pp.2416 - 2429. ⟨10.1109/TPAMI.2016.2528240⟩
DOI: DOI : 10.1109/TPAMI.2016.2528240
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titre: Hyper-Graphs Inference through Convex Relaxations and Move Making Algorithms: Contributions and Applications in Artificial Vision
auteur: Nikos Komodakis, M. Pawan Kumar, Nikos Paragios
article: Foundations and Trends in Computer Graphics and Vision, Now Publishers, 2016, 10 (1), pp.1-102. ⟨10.1561/0600000066⟩
DOI: DOI : 10.1561/0600000066
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titre: A Probabilistic Atlas of Diffuse WHO Grade II Glioma Locations in the Brain
auteur: Sarah Parisot, Amélie Darlix, Cédric Baumann, Sonia Zouaoui, Yordanka Yordanova, Marie Blonski, Valérie Rigau, Stéphane Chemouny, Luc Taillandier, Luc Bauchet, Hugues Duffau, Nikos Paragios
article: PLoS ONE, Public Library of Science, 2016, 11 (1), pp.e0144200. ⟨10.1371/journal.pone.0144200⟩
DOI: DOI : 10.1371/journal.pone.0144200
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titre: Graph-Based Registration, Change Detection, and Classification in Very High Resolution Multitemporal Remote Sensing Data
auteur: Maria Vakalopoulou, Konstantinos Karantzalos, Nikos Komodakis, Nikos Paragios
article: IEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensing, IEEE, 2016, 9, pp.2940 - 2951. ⟨10.1109/JSTARS.2016.2557081⟩
DOI: DOI : 10.1109/JSTARS.2016.2557081
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titre: (Hyper)-Graphical Models in Biomedical Image Analysis
auteur: Nikos Paragios, Enzo Ferrante, Ben Glocker, Nikos Komodakis, Sarah Parisot, Evangelia I. Zacharaki
article: Medical Image Analysis, Elsevier, 2016, ⟨10.1016/j.media.2016.06.028⟩
DOI: DOI : 10.1016/j.media.2016.06.028
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Conference papers

titre: Rigid Slice-To-Volume Medical Image Registration through Markov Random Fields
auteur: Roque Porchetto, Franco Stramana, Enzo Ferrante, Nikos Paragios
article: 19th Int Conf on Med Image Comp and Comp-Assisted Intervent (MICCAI) / Int Workshop on Med Comp Vis (MCV) / 3rd Int Workshop on Bayesian and Graph Models for Biomedical Imaging (BAMBI), Oct 2016, Athens, Greece. pp.172-185, ⟨10.1007/978-3-319-61188-4_16⟩
DOI: DOI : 10.1007/978-3-319-61188-4_16
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titre: Comparison of Multi-resolution Analysis Patterns for Texture Classification of Breast Tumors Based On DCE-MRI
auteur: Alexia Tzalavra, Kalliopi Dalakleidi, Evangelia I. Zacharaki, Nikolaos Tsiaparas, Fotios Constantinidis, Nikos Paragios, Konstantina S. Nikita
article: MICCAI 2016 - 7th International Workshop on Machine Learning in Medical Imaging, Oct 2016, Athens, Greece. pp.296-304, ⟨10.1007/978-3-319-47157-0_36⟩
DOI: DOI : 10.1007/978-3-319-47157-0_36
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titre: Deformable group-wise registration using a physiological model: application to DIffusion-Weighted MRI
auteur: Evgenios N. Kornaropoulos, Evangelia I. Zacharaki, Pierre Zerbib, Chieh Lin, Alain Rahmouni, Nikos Paragios
article: ICIP 2016 - IEEE International Conference on Image Processing, Sep 2016, Phoenix, Arizona, United States
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titre: Simultaneous registration, segmentation and change detection from multisensor, multitemporal satellite image pairs.
auteur: Maria Vakalopoulou, Christos Platias, Maria Papadomanolaki, Nikos Paragios, Konstantinos Karantzalos
article: International Geoscience and Remote Sensing Symposium (IGARSS), Jul 2016, Beijing, China. ⟨10.1109/IGARSS.2016.7729469⟩
DOI: DOI : 10.1109/IGARSS.2016.7729469
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titre: Optimal estimation of diffusion in DW-MRI by high-order MRF-based joint deformable registration and diffusion modeling
auteur: Evgenios N. Kornaropoulos, Evangelia I. Zacharaki, Pierre Zerbib, Chieh Lin, Alain Rahmouni, Nikos Paragios
article: WBIR 2016 - 7th International Workshop on Biomedical Image Registration, Jul 2016, Las Vegas, Nevada, United States
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titre: A Machine Learning Methodology for Enzyme Functional Classification Combining Structural and Protein Sequence Descriptors
auteur: Afshine Amidi, Shervine Amidi, Dimitrios Vlachakis, Nikos Paragios, Evangelia I. Zacharaki
article: IWBBIO 2016 - 4th International Conference Bioinformatics and Biomedical Engineering, Apr 2016, Granada, Spain. pp.728-738, ⟨10.1007/978-3-319-31744-1_63⟩
DOI: DOI : 10.1007/978-3-319-31744-1_63
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titre: Sub-cortical brain structure segmentation using F-CNN's
auteur: Mahsa Shakeri, Stavros Tsogkas, Enzo Ferrante, Sarah Lippe, Samuel Kadoury, Nikos Paragios, Iasonas Kokkinos
article: ISBI 2016 - International Symposium on Biomedical Imaging, 2016, Prague, Czech Republic
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titre: Prior-based Coregistration and Cosegmentation
auteur: Mahsa Shakeri, Enzo Ferrante, Stavros Tsogkas, Sarah Lippe, Samuel Kadoury, Iasonas Kokkinos, Nikos Paragios
article: MICCAI 2016 - 19th International Conference on Medical Image Computing and Computer Assisted Intervention, 2016, Athens, Greece
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2015

Journal articles

titre: Learning Grammars for Architecture-Specific Facade Parsing
auteur: Raghudeep Gadde, Renaud Marlet, Nikos Paragios
article: International Journal of Computer Vision, Springer Verlag, 2015, 117 (3), pp.290-316. ⟨10.1007/s11263-016-0887-4⟩
DOI: DOI : 10.1007/s11263-016-0887-4
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titre: Compressed-sensing-based content-driven hierarchical reconstruction: Theory and application to C-arm cone-beam tomography
auteur: Hélène Langet, Cyril Riddell, Aymeric Reshef, Yves Trousset, Arthur Tenenhaus, Elisabeth Lahalle, Gilles Fleury, Nikos Paragios
article: Medical Physics, American Association of Physicists in Medicine, 2015, 42 (9), ⟨10.1118/1.4928144⟩
DOI: DOI : 10.1118/1.4928144
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titre: Guest Editors' Introduction: Special Section on Higher Order Graphical Models in Computer Vision
auteur: Karteek Alahari, Dhruv Batra, Srikumar Ramalingam, Nikos Paragios, Richard Zemel
article: IEEE Transactions on Pattern Analysis and Machine Intelligence, Institute of Electrical and Electronics Engineers, 2015, 37 (7), pp.1321-1322. ⟨10.1109/TPAMI.2015.2434651⟩
DOI: DOI : 10.1109/TPAMI.2015.2434651
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titre: Slice-to-Volume Deformable Registration: Efficient one shot consensus between plane selection and in-plane deformation
auteur: Enzo Ferrante, Vivien Fecamp, Nikos Paragios
article: International Journal of Computer Assisted Radiology and Surgery, Springer Verlag, 2015, 10 (6), pp.791-800. ⟨10.1007/s11548-015-1205-2⟩
DOI: DOI : 10.1007/s11548-015-1205-2
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Conference papers

titre: Graph-Based Motion-Driven Segmentation of the Carotid Atherosclerotique Plaque in 2D Ultrasound Sequences
auteur: Aimilia Gastounioti, Aristeidis Sotiras, Konstantina S. Nikita, Nikos Paragios
article: Medical Image Computing and Computer-Assisted Intervention – MICCAI 2015, Oct 2015, Munich, Germany. ⟨10.1007/978-3-319-24574-4_66⟩
DOI: DOI : 10.1007/978-3-319-24574-4_66
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titre: Simultaneous Linear and Deformable Registration
auteur: Vivien Fécamp, Aristeidis Sotiras, Nikos Paragios
article: Medical Imaging Computing and Computer Assisted Interventions, Oct 2015, Munich, Germany
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titre: Building detection in very high resolution multispectral data with deep learning features
auteur: Maria Vakalopoulou, Konstantinos Karantzalos, Nikos Komodakis, Nikos Paragios
article: Geoscience and Remote Sensing Symposium (IGARSS), 2015 IEEE International, Jul 2015, Milan, Italy. pp.1873-1876, ⟨10.1109/IGARSS.2015.7326158⟩
DOI: DOI : 10.1109/IGARSS.2015.7326158
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titre: Simultaneous Registration and Change Detection in Multitemporal, Very High Resolution Remote Sensing Data
auteur: Maria Vakalopoulou, Konstantinos Karatzalos, Nikos Komodakis, Nikos Paragios
article: 2015 IEEE Conference on Computer Vision and Pattern Recognition Workshops (CVPRW), Jun 2015, Boston, United States. pp.61-69, ⟨10.1109/CVPRW.2015.7301384⟩
DOI: DOI : 10.1109/CVPRW.2015.7301384
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titre: Quasi real-time sub-space 3D deformable fusion
auteur: Bharat Singh, Stavros Alchatzidis, Nikos Paragios
article: Biomedical Imaging (ISBI), 2015 IEEE 12th International Symposium on, Apr 2015, New York, NY, United States. ⟨10.1109/ISBI.2015.7164000⟩
DOI: DOI : 10.1109/ISBI.2015.7164000
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titre: Modular linear iconic matching using higher order graphs
auteur: Vivien Fecamp, Aristeidis Sotiras, Nikos Paragios
article: ISBI 2015 - IEEE 12th International Symposium on Biomedical Imaging, Apr 2015, New York, United States. pp.1097 - 1101, ⟨10.1109/ISBI.2015.7164063⟩
DOI: DOI : 10.1109/ISBI.2015.7164063
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titre: Local atlas selection for discrete multi-atlas segmentation
auteur: Stavros Alchatzidis, Aristeidis Sotiras, Nikos Paragios
article: International Symposium on Biomedical Imaging, Apr 2015, New York, United States. ⟨10.1109/isbi.2015.7163888⟩
DOI: DOI : 10.1109/isbi.2015.7163888
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titre: Implicit Planar and In-Plane Deformable Mapping in Medical Images Through High Order Graphs
auteur: Enzo Ferrante, Vivien Fecamp, Nikos Paragios
article: IEEE International Symposium on BIOMEDICAL IMAGING: From Nano to Macro (ISBI), Apr 2015, Ney York, United States
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Book sections

titre: Monte carlo sampling for the segmentation of tubular structures
auteur: Charles Florin, Nikos Paragios, James Williams
article: Handbook of biomedical imaging : methodologies and clinical research, Springer, pp.263-275, 2015, 9780387097497; 9780387097480. ⟨10.1007/978-0-387-09749-7_14⟩
DOI: DOI : 10.1007/978-0-387-09749-7_14
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titre: Diffusion tensor estimation, regularization and classification
auteur: Radhouène Neji, Noura Azzabou, Gilles Fleury, Nikos Paragios
article: Handbook of biomedical imaging : methodologies and clinical research, Springer, pp.437-454, 2015, 9780387097497; 9780387097480. ⟨10.1007/978-0-387-09749-7_24⟩
DOI: DOI : 10.1007/978-0-387-09749-7_24
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Books

titre: Handbook of Biomedical Imaging: Methodologies and Clinical Research
auteur: Nikos Paragios, Jim Duncan, Nicholas Ayache
article: Paragios, Nikos and Duncan, Jim and Ayache, Nicholas. Springer, pp.590, 2015, 978-0-387-09748-0. ⟨10.1007/978-0-387-09749-7⟩
DOI: DOI : 10.1007/978-0-387-09749-7
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Reports

titre: Graph Based Slice-to-Volume Deformable Registration
auteur: Enzo Ferrante, Nikos Paragios
article: [Research Report] RR-8803, INRIA Saclay; Center for Visual Computing, CentraleSupelec, Inria, Université Paris-Saclay. 2015, pp.30
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titre: (Hyper)-Graphs Inference via Convex Relaxations and Move Making Algorithms: Contributions and Applications in artificial vision
auteur: Pawan Kumar, Nikos Komodakis, Nikos Paragios
article: [Research Report] RR-8798, Inria. 2015, pp.65
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titre: Higher-order Graph Principles towards Non-rigid Surface Registration
auteur: Yun Zeng, Chaohui Wang, Xianfeng Gu, Dimitris Samaras, Nikos Paragios
article: [Research Report] RR-8607, INRIA Saclay - Ile-de-France; INRIA. 2015, pp.31
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2014

Journal articles

titre: A Framework for Efficient Structured Max-Margin Learning of High-Order MRF models
auteur: Nikos Komodakis, Bo Xiang, Nikos Paragios
article: IEEE Transactions on Pattern Analysis and Machine Intelligence, Institute of Electrical and Electronics Engineers, 2014, ⟨10.1109/TPAMI.2014.2368990⟩
DOI: DOI : 10.1109/TPAMI.2014.2368990
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titre: Concurrent tumor segmentation and registration with uncertainty-based sparse non-uniform graphs
auteur: Sarah Parisot, William Wells, Stéphane Chemouny, Hugues Duffau, Nikos Paragios
article: Medical Image Analysis, Elsevier, 2014, 18 (4), pp.647 - 659. ⟨10.1016/j.media.2014.02.006⟩
DOI: DOI : 10.1016/j.media.2014.02.006
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titre: An Explicit Shape-constrained MRF-based Contour Evolution Method for 2D Medical Image Segmentation
auteur: Deepak Chittajallu, Nikos Paragios, Ioannis Kakadiaris
article: IEEE Journal of Biomedical and Health Informatics, Institute of Electrical and Electronics Engineers, 2014, pp.2168-2194. ⟨10.1109/JBHI.2013.2257820⟩
DOI: DOI : 10.1109/JBHI.2013.2257820
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Conference papers

titre: Discrete Multi Atlas Segmentation using Agreement Constraints
auteur: Stavros Alchatzidis, Aristeidis Sotiras, Nikos Paragios
article: British Machine Vision Conference, British Machine Vision Association, Sep 2014, Nottingham, United Kingdom
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titre: Discrete Visual Perception
auteur: Nikos Paragios, Nikos Komodakis
article: International Conference on Pattern Recognition, Aug 2014, Stockholm, Sweden. pp.1-7
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titre: Discriminative learning of deformable contour models
auteur: Haithem Boussaid, Iasonas Kokkinos, Nikos Paragios
article: Int.l Symposium on Biomedical Imaging (ISBI), Apr 2014, Bejing, China. pp.624 - 628, ⟨10.1109/ISBI.2014.6867948⟩
DOI: DOI : 10.1109/ISBI.2014.6867948
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Patents

titre: Method and device for elastic registration between a two-dimensional digital image and a slice of a three-dimensional volume with overlapping content
auteur: Nikos Paragios, Enzo Ferrante, Rafael Marini Silva
article: United States, Patent n° : US 2014/0192046 A1. 2014, pp.12
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Reports

titre: A Framework for Efficient Structured Max-Margin Learning of High-Order MRF Models
auteur: Nikos Komodakis, Bo Xiang, Nikos Paragios
article: [Research Report] RR-8645, Ecole de Ponts-ParisTech; Ecole Centrale de Paris; Inria Saclay Ile de France; INRIA. 2014, pp.1 - 34
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2013

Journal articles

titre: Spine Segmentation in Medical Images Using Manifold Embeddings and Higher-Order MRFs
auteur: Samuel Kadoury, Hubert Labelle, Nikos Paragios
article: IEEE Transactions on Medical Imaging, Institute of Electrical and Electronics Engineers, 2013, 32 (7), pp.1227-1238. ⟨10.1109/TMI.2013.2244903⟩
DOI: DOI : 10.1109/TMI.2013.2244903
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titre: Deformable Medical Image Registration: A Survey
auteur: Aristeidis Sotiras, Christos Davatzikos, Nikos Paragios
article: IEEE Transactions on Medical Imaging, Institute of Electrical and Electronics Engineers, 2013, 32 (7), pp.1153-1190. ⟨10.1109/TMI.2013.2265603⟩
DOI: DOI : 10.1109/TMI.2013.2265603
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titre: Simultaneous Cast Shadows, Illumination and Geometry Inference Using Hypergraphs
auteur: A. Panagopoulos, Chaohui Wang, Dimitris Samaras, Nikos Paragios
article: IEEE Transactions on Pattern Analysis and Machine Intelligence, Institute of Electrical and Electronics Engineers, 2013, 35 (2), pp.437-449. ⟨10.1109/TPAMI.2012.110⟩
DOI: DOI : 10.1109/TPAMI.2012.110
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titre: Markov Random Field Modeling, Inference & Learning in Computer Vision & Image Understanding: A Survey
auteur: Chaohui Wang, Nikos Komodakis, Nikos Paragios
article: Computer Vision and Image Understanding, Elsevier, 2013, 117 (11), pp.1610-1627. ⟨10.1016/j.cviu.2013.07.004⟩
DOI: DOI : 10.1016/j.cviu.2013.07.004
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titre: Parsing Facades with Shape Grammars and Reinforcement Learning
auteur: Olivier Teboul, Iasonas Kokkinos, Loïc Simon, Koutsourakis Panagiotis, Nikos Paragios
article: IEEE Transactions on Pattern Analysis and Machine Intelligence, Institute of Electrical and Electronics Engineers, 2013, 35 (7), pp.1744-1756. ⟨10.1109/TPAMI.2012.252⟩
DOI: DOI : 10.1109/TPAMI.2012.252
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Conference papers

titre: Uncertainty-driven Efficiently-Sampled Sparse Graphical Models for Concurrent Tumor Segmentation and Atlas Registration
auteur: Sarah Parisot, William Wells Iii, Stéphane Chemouny, Hugues Duffau, Nikos Paragios
article: ICCV - 14th International Conference on Computer Vision, Dec 2013, Sydney, Australia
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titre: A Generic Deformation Model for Dense Non-Rigid Surface Registration: a Higher-Order MRF-based Approach
auteur: Yun Zeng, Chaohui Wang, David Gu, Dimitris Samaras, Nikos Paragios
article: ICCV 2013 - IEEE International Conference on Computer Vision, Dec 2013, Sydney, Australia. pp.3360-3367, ⟨10.1109/ICCV.2013.417⟩
DOI: DOI : 10.1109/ICCV.2013.417
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titre: Sparse classification with MRI based markers for neuromuscular disease categorization
auteur: Katerina Gkirtzou, Jean-François Deux, Guillaume Bassez, Aristeidis Sotiras, Alain Rahmouni, Thibault Varacca, Nikos Paragios, Matthew Blaschko
article: 4th International Workhop on Machine Learning in Medical Imaging, Sep 2013, Nagoya, Japan
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titre: Non-rigid 2D-3D Medical Image Registration using Markov Random Fields
auteur: Enzo Ferrante, Nikos Paragios
article: 16th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2013, Sep 2013, Nagoya, Japan. pp.163-170
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titre: Discriminative Parameter Estimation for Random Walks Segmentation
auteur: Pierre-Yves Baudin, Danny Goodman, Puneet Kumar, Noura Azzabou, Pierre G. Carlier, Nikos Paragios, M. Pawan Kumar
article: 16th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2013), Sep 2013, Nagoya, Japan. 8p
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titre: Rapid Mode Estimation for 3D Brain MRI Tumor Segmentation
auteur: Haithem Boussaid, Iasonas Kokkinos, Nikos Paragios
article: Energy Minimization Methods in Computer Vision and Pattern Recognition, Aug 2013, Lund, Sweden
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titre: Pose Invariant Deformable Shape Priors Using L1 Higher Order Sparse Graphs
auteur: Bo Xiang, Nikos Komodakis, Nikos Paragios
article: 9th International Symposium on Visual Computing - ISVC 2013, Jul 2013, Rethymnon, Greece
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titre: Nonlinear diffusion constraints for reconstructing subsampled rotational angiography data
auteur: Hélène Langet, Aymeric Reshef, Cyril Riddell, Yves Trousset, Arthur Tenenhaus, Elisabeth Lahalle, Gilles Fleury, Nikos Paragios
article: Fully3D 2013, Jun 2013, Lake Tahoe, California, United States. pp.38-41
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Book sections

titre: Modeling Shapes with Higher-Order Graphs: Methodology and Applications
auteur: Chaohui Wang, Yun Zeng, Dimitris Samaras, Nikos Paragios
article: Shape Perception in Human and Computer Vision: An Interdisciplinary Perspective, Sven J. Dickinson and Zygmunt Pizlo, pp.459-471, 2013
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Directions of work or proceedings

titre: International Journal of Computer Vision - Special Issue : Novel Representations, Methods, and Algorithms in Computer Vision
auteur: Kostas Daniilidis, Petros Maragos, Nikos Paragios
article: France. 103 (2), Springer, pp.177-266, 2013
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Reports

titre: Discriminative Parameter Estimation for Random Walks Segmentation: Technical Report
auteur: Pierre-Yves Baudin, Danny Goodman, Puneet Kumar, Noura Azzabou, Pierre G. Carlier, Nikos Paragios, M. Pawan Kumar
article: [Research Report] 2013
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2012

Conference papers

titre: Image contextual representation and matching through hierarchies and higher order graphs
auteur: Jose Rubio, Joan Serrat, Antonio López, Nikos Paragios
article: 21st International Conference on Pattern Recognition - ICPR 2012, Nov 2012, Tsukuba, Japan. pp.2664 - 2667
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titre: MRF-Based blind image deconvolution
auteur: Nikos Komodakis, Nikos Paragios
article: 11th Asian Conference on Computer Vision - ACCV 2012, Nov 2012, Daejeon, North Korea. pp.361-374
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titre: Bag-of-multimedia-words for image classification
auteur: Amel Znaidia, Aymen Shabou, Hervé Le Borgne, Céline Hudelot, Nikos Paragios
article: Proceedings of the 21st International Conference on Pattern Recognition, ICPR 2012, Nov 2012, Tsukuba, Japan. pp.1509-1512
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titre: High-Level Bottom-Up Cues for Top-Down Parsing of Facade Images
auteur: David Ok, Mateusz Koziński, Renaud Marlet, Nikos Paragios
article: 3DIMPVT, Oct 2012, Zürich, Switzerland. pp.N/A
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titre: Similarity-based appearance-prior for fitting a subdivision mesh in gene expression images.
auteur: Yen H. Le, Uday Kurkure, Nikos Paragios, Tao Ju, James P. Carson, Ioannis Kakadiaris
article: Medical Image Computing and Computer-Assisted Intervention - MICCAI 2012, Oct 2012, Nice, France. pp.577-84, ⟨10.1007/978-3-642-33415-3_71⟩
DOI: DOI : 10.1007/978-3-642-33415-3_71
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titre: Compressed Sensing Dynamic Reconstruction in Rotational Angiography
auteur: Hélène Langet, Cyril Riddell, Yves Trousset, Arthur Tenenhaus, Elisabeth Lahalle, Gilles Fleury, Nikos Paragios
article: MICCAI'12, Oct 2012, Nice, France. pp.223-230, ⟨10.1007/978-3-642-33415-3_28⟩
DOI: DOI : 10.1007/978-3-642-33415-3_28
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titre: Joint Tumor Segmentation and Dense Deformable Registration of Brain MR Images
auteur: Sarah Parisot, Hugues Duffau, Stéphane Chemouny, Nikos Paragios
article: MICCAI - 15th International Conference on Medical Image Computing and Computer-Assisted Intervention - 2012, Oct 2012, Nice, France. pp.651-658, ⟨10.1007/978-3-642-33418-4_80⟩
DOI: DOI : 10.1007/978-3-642-33418-4_80
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titre: Tomographic Reconstruction with L1-Minimization Strategy for Rotational Angiography
auteur: Hélène Langet, Cyril Riddell, Arthur Tenenhaus, Yves Trousset, Elisabeth Lahalle, Gilles Fleury, Nikos Paragios
article: 20th International Conference on computational statistics (COMPSTAT'12), Aug 2012, Limassol, Cyprus
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titre: Unsupervised co-segmentation through region matching
auteur: Jose Rubio, Joan Serrat, Antonio López, Nikos Paragios
article: 25th IEEE Conference on Computer Vision and Pattern Recognition - CVPR 2012, Jun 2012, Rhode Island, United States. pp.749-756
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titre: Parameter-free/Pareto-driven procedural 3D reconstruction of buildings from ground-level sequences
auteur: Loïc Simon, Olivier Teboul, Panagiotis Koutsourakis, Luc van Gool, Nikos Paragios
article: 25th IEEE Conference on Computer Vision and Pattern Recognition - CVPR 2012, Jun 2012, Rhode Island, United States. pp.518-525, ⟨10.1109/CVPR.2012.6247716⟩
DOI: DOI : 10.1109/CVPR.2012.6247716
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titre: Graph-based Detection, Segmentation & Characterization of Brain Tumors
auteur: Sarah Parisot, Hugues Duffau, Stéphane Chemouny, Nikos Paragios
article: CVPR - 25th IEEE Conference on Computer Vision and Pattern Recognition 2012, Jun 2012, Providence, United States
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titre: Manifold-constrained embeddings for the detection of white matter lesions in brain MRI
auteur: Samuel Kadoury, Guray Erus, Evangelina I. Zacharaki, Nikos Paragios, Davatzikos Christos
article: 2012 IEEE 9th International Symposium on Biomedical Imaging - ISBI 2012, May 2012, Barcelona, Spain. pp.562 - 565
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titre: Graph-based guide-wire segmentation through fusion of contrast-enhanced and fluoroscopic images
auteur: Nicolas Honnorat, Régis Vaillant, Nikos Paragios
article: 2012 IEEE 9th International Symposium on Biomedical Imaging - ISBI 2012, May 2012, Barcelona, Spain. pp.948 - 951
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titre: Compressed sensing subtracted rotational angiography with multiple sparse penalty
auteur: Hélène Langet, C. Riddell, Y. Trousset, Arthur Tenenhaus, Elisabeth Lahalle, Gilles Fleury, Nikos Paragios
article: 2012 9th IEEE International Symposium on Biomedical Imaging (ISBI 2012) , May 2012, Barcelone, Spain. pp.884-887, ⟨10.1109/ISBI.2012.6235690⟩
DOI: DOI : 10.1109/ISBI.2012.6235690
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titre: Automatic skeletal muscle segmentation through random walks and graph-based seed placement
auteur: Pierre-Yves Baudin, Noura Azzabou, Pierre Carlier, Nikos Paragios
article: International Symposium Biomedical Imaging (ISBI), May 2012, Barcelone, Spain. pp.1036--1039
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titre: Discrete symmetric image registration
auteur: Aristeidis Sotiras, Nikos Paragios
article: Biomedical Imaging (ISBI), 2012 9th IEEE International Symposium on, 2012, Spain. pp.342-345
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titre: Manifold-enhanced Segmentation through Random Walks on Linear Subspace Priors
auteur: Pierre-Yves Baudin, Noura Azzabou, Pierre Carlier, Nikos Paragios
article: British Machine Vision Conference, 2012, United Kingdom. pp.51.1-51.10
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titre: Prior Knowledge, Random Walks and Human Skeletal Muscle Segmentation
auteur: Pierre-Yves Baudin, Noura Azzabou, Pierre Carlier, Nikos Paragios
article: Medical Image Computing and Computer-Assisted Intervention (MICCAI), 2012, France. pp.569-576
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Reports

titre: Markov Random Fields in Vision Perception: A Survey
auteur: Chaohui Wang, Nikos Paragios
article: [Research Report] RR-7945, INRIA. 2012
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titre: Deformable Medical Image Registration: A Survey
auteur: Aristeidis Sotiras, Christos Davatzikos, Nikos Paragios
article: [Research Report] RR-7919, INRIA. 2012
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2011

Journal articles

titre: Special issue on Optimization for vision, graphics and medical imaging: Theory and applications
auteur: Nikos Komodakis, Georg Langs, Horst Bischof, Nikos Paragios
article: Computer Vision and Image Understanding, Elsevier, 2011, 115 (12), ⟨10.1016/j.cviu.2011.10.005⟩
DOI: DOI : 10.1016/j.cviu.2011.10.005
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titre: Model-Based 3D Hand Pose Estimation from Monocular Video
auteur: Martin de la Gorce, J. Fleet D, Nikos Paragios
article: IEEE Transactions on Pattern Analysis and Machine Intelligence, Institute of Electrical and Electronics Engineers, 2011, 33 (9), pp.1793 - 1805. ⟨10.1109/TPAMI.2011.33⟩
DOI: DOI : 10.1109/TPAMI.2011.33
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titre: DRAMMS: Deformable registration via attribute matching and mutual-saliency weighting.
auteur: Yangming Ou, Aristeidis Sotiras, Nikos Paragios, Christos Davatzikos
article: Medical Image Analysis, Elsevier, 2011, 15 (4), pp.622-639. ⟨10.1016/j.media.2010.07.002⟩
DOI: DOI : 10.1016/j.media.2010.07.002
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titre: Automatic inference of articulated spine models in CT images using high-order Markov Random Fields
auteur: Samuel Kadoury, Hubert Labelle, Nikos Paragios
article: Medical Image Analysis, Elsevier, 2011, 15 (4), pp.426-437. ⟨10.1016/j.media.2011.01.006⟩
DOI: DOI : 10.1016/j.media.2011.01.006
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titre: Learning deformation and structure simultaneously: in situ endograft deformation analysis.
auteur: Georg Langs, Nikos Paragios, Pascal Desgranges, Alain Rahmouni, Hicham Kobeiter
article: Medical Image Analysis, Elsevier, 2011, 15 (1), pp.12-21. ⟨10.1016/j.media.2010.06.005⟩
DOI: DOI : 10.1016/j.media.2010.06.005
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titre: Deformable Medical Image Registration: Setting the State of the Art with Discrete Methods
auteur: Ben Glocker, Aristeidis Sotiras, Nikos Komodakis, Nikos Paragios
article: Annual Review of Biomedical Engineering, Annual Reviews, 2011, 13, pp.219-244
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titre: MRF Energy Minimization and Beyond via Dual Decomposition
auteur: Nikos Komodakis, Nikos Paragios, Georgios Tziritas
article: IEEE Transactions on Pattern Analysis and Machine Intelligence, Institute of Electrical and Electronics Engineers, 2011, 33 (3), pp.531-552
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titre: Random Exploration of the Procedural Space for Single-View 3D Modeling of Buildings
auteur: Loïc Simon, O. Teboul, Koutsourakis Panagiotis, Nikos Paragios
article: International Journal of Computer Vision, Springer Verlag, 2011, 93 (2), pp.253-271
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Conference papers

titre: Markov Random Field-based fitting of a subdivision-based geometric atlas
auteur: Uday Kurkure, Yen Le, Nikos Paragios, Tao Ju, James Carson, Ioannis Kakadiaris
article: 13th International Conference on Computer Vision - ICCV 2011, Nov 2011, Barcelona, Spain. pp.2540-2547, ⟨10.1109/ICCV.2011.6126541⟩
DOI: DOI : 10.1109/ICCV.2011.6126541
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titre: Viewpoint invariant 3D landmark model inference from monocular 2D images using higher-order priors
auteur: Chaohui Wang, Yun Zeng, Loïc Simon, Ioannis Kakadiaris, Dimitris Samaras, Nikos Paragios
article: 13th International Conference on Computer Vision - ICCV 2011, Nov 2011, Barcelona, Spain. pp.319-326, ⟨10.1109/ICCV.2011.6126258⟩
DOI: DOI : 10.1109/ICCV.2011.6126258
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titre: Efficient parallel message computation for MAP inference
auteur: Stavros Alchatzidis, Aristeidis Sotiras, Nikos Paragios
article: International Conference on Computer Vision, Nov 2011, Barcelone, Spain. pp.1379 - 1386
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titre: Graph-Based Geometric-Iconic Guide-Wire Tracking
auteur: Nicolas Honnorat, Régis Vaillant, Nikos Paragios
article: 14th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2011, Sep 2011, Toronto, Canada. pp.9-16, ⟨10.1007/978-3-642-23623-5_2⟩
DOI: DOI : 10.1007/978-3-642-23623-5_2
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titre: Pose-Invariant 3D Proximal Femur Estimation through Bi-planar Image Segmentation with Hierarchical Higher-Order Graph-Based Priors
auteur: Chaohui Wang, Haithem Boussaid, Loïc Simon, Jean-Yves Lazennec, Nikos Paragios
article: 14th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2011, Sep 2011, Toronto, Canada. pp.346-353, ⟨10.1007/978-3-642-23626-6_43⟩
DOI: DOI : 10.1007/978-3-642-23626-6_43
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titre: Graph Based Spatial Position Mapping of Low-grade Gliomas
auteur: Sarah Parisot, Hugues Duffau, Stéphane Chemouny, Nikos Paragios
article: MICCAI - 14th International Conference on Medical Image Computing and Computer-Assisted Intervention - 2011, Sep 2011, Toronto, Canada. pp.508-515, ⟨10.1007/978-3-642-23629-7_62⟩
DOI: DOI : 10.1007/978-3-642-23629-7_62
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titre: 3D Model-based Reconstruction of the Proximal Femur from Low-dose Biplanar X-Ray Images
auteur: Haithem Boussaid, Samuel Kadoury, Iasonas Kokkinos, Jean-Yves Lazennec, Guoyan Zheng, Nikos Paragios
article: The 22nd British Machine Vision Conference - BMVC 2011, Aug 2011, Dundee, United Kingdom. pp.1-10, ⟨10.5244/C.25.35⟩
DOI: DOI : 10.5244/C.25.35
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titre: Landmark/image-based deformable registration of gene expression data
auteur: Uday Kurkure, Yen Le, Nikos Paragios, James Carson, Tao Ju, Ioannis Kakadiaris
article: 24th IEEE Conference on Computer Vision and Pattern Recognition - CVPR 2011, Jun 2011, Rhode Island, United States. pp.1089-1096, ⟨10.1109/CVPR.2011.5995708⟩
DOI: DOI : 10.1109/CVPR.2011.5995708
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titre: Illumination estimation and cast shadow detection through a higher-order graphical model
auteur: A. Panagopoulos, Chaohui Wang, Dimitris Samaras, Nikos Paragios
article: 2011 IEEE Conference on Computer Vision and Pattern Recognition - CVPR 2011, Jun 2011, Colorado Springs, United States. pp.673 - 680, ⟨10.1109/CVPR.2011.5995585⟩
DOI: DOI : 10.1109/CVPR.2011.5995585
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titre: Intrinsic dense 3D surface tracking
auteur: Yun Zeng, Chaohui Wang, Yang Wang, Xianfeng Gu, Dimitris Samaras, Nikos Paragios
article: 24th IEEE Conference on Computer Vision and Pattern Recognition - CVPR 2011, Jun 2011, Colorado Springs, United States. pp.1225-1232, ⟨10.1109/CVPR.2011.5995513⟩
DOI: DOI : 10.1109/CVPR.2011.5995513
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titre: Optimal similarity registration of volumetric images
auteur: Effrosini Kokiopoulou, Daniel Kressner, Michail Zervos, Nikos Paragios
article: 24th IEEE Conference on Computer Vision and Pattern Recognition - CVPR 2011, Jun 2011, Colorado Springs, United States. pp.2449-2456, ⟨10.1109/CVPR.2011.5995337⟩
DOI: DOI : 10.1109/CVPR.2011.5995337
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titre: Shape grammar parsing via Reinforcement Learning
auteur: Olivier Teboul, Iasonas Kokkinos, Loïc Simon, Panagiotis Koutsourakis, Nikos Paragios
article: 24th IEEE Conference on Computer Vision and Pattern Recognition - CVPR 2011, Jun 2011, Colorado Springs, United States. pp.2273-2280, ⟨10.1109/CVPR.2011.5995319⟩
DOI: DOI : 10.1109/CVPR.2011.5995319
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titre: Boosted metric learning for 3D multi-modal deformable registration
auteur: Fabrice Michel, Michael Bronstein, Alexander Bronstein, Nikos Paragios
article: 2011 IEEE 8th International Symposium on Biomedical Imaging - ISBI 2011, Mar 2011, Chicago, United States. pp.1209-1214, ⟨10.1109/ISBI.2011.5872619⟩
DOI: DOI : 10.1109/ISBI.2011.5872619
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titre: Curvilinear structures extraction in cluttered bioimaging data with discrete optimization methods
auteur: Nicolas Honnorat, Régis Vaillant, James Duncan, Nikos Paragios
article: 2011 IEEE 8th International Symposium on Biomedical Imaging - ISBI 2011, Mar 2011, Chicago, United States. pp.1353-1357, ⟨10.1109/ISBI.2011.5872651⟩
DOI: DOI : 10.1109/ISBI.2011.5872651
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titre: Landmark-based segmentation of lungs while handling partial correspondences using sparse graph-based priors
auteur: Ahmed Besbes, Nikos Paragios
article: 2011 IEEE 8th International Symposium on Biomedical Imaging - ISBI 2011, Mar 2011, Chicago, United States. pp.989-995, ⟨10.1109/ISBI.2011.5872568⟩
DOI: DOI : 10.1109/ISBI.2011.5872568
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titre: Tagged cardiac MR image segmentation using boundary & regional-support and graph-based deformable priors
auteur: Bo Xiang, Chaohui Wang, Jean-François Deux, Alain Rahmouni, Nikos Paragios
article: 2011 IEEE 8th International Symposium on Biomedical Imaging - ISBI 2011, Mar 2011, Chicago, United States. pp.1706-1711, ⟨10.1109/ISBI.2011.5872733⟩
DOI: DOI : 10.1109/ISBI.2011.5872733
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Directions of work or proceedings

titre: Computer Vision and Image Understanding, Special issue on Optimization for vision, graphics and medical imaging: Theory and applications
auteur: Nikos Komodakis, Georg Langs, Horst Bischof, Nikos Paragios
article: Elsevier, pp.1597, 2011
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Reports

titre: Discrete Methods for Guide-wire Segmentation and Tracking
auteur: Nicolas Honnorat, Régis Vaillant, Nikos Paragios
article: [Research Report] RR-7718, INRIA. 2011
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2010

Journal articles

titre: A variational approach to monocular hand-pose estimation
auteur: Martin de la Gorce, Nikos Paragios
article: Computer Vision and Image Understanding, Elsevier, 2010, pp.363-372
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titre: Spatio-temporal speckle reduction in ultrasound sequences
auteur: Noura Azzabou, Nikos Paragios
article: Inverse Problems and Imaging , AIMS American Institute of Mathematical Sciences, 2010, 4 (2), pp.211-222
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titre: Linear intensity-based image registration by Markov random fields and discrete optimization
auteur: Darko Zikic, Ben Glocker, Oliver Kutter, Martin Groher, Nikos Komodakis, Ali Kamen, Nikos Paragios, Nassir Navab
article: Medical Image Analysis, Elsevier, 2010, 14 (4), pp.550-562. ⟨10.1016/j.media.2010.04.003⟩
DOI: DOI : 10.1016/j.media.2010.04.003
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titre: Large-Scale Building Reconstruction Through Information Fusion and 3-D Priors
auteur: Konstantinos Karantzalos, Nikos Paragios
article: IEEE Transactions on Geoscience and Remote Sensing, Institute of Electrical and Electronics Engineers, 2010, 48 (5), pp.2283-2296. ⟨10.1109/TGRS.2009.2039220⟩
DOI: DOI : 10.1109/TGRS.2009.2039220
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titre: Image Reconstruction Using Particle Filters and Multiple Hypotheses Testing
auteur: Noura Azzabou, Nikos Paragios, Frédéric Guichard
article: IEEE Transactions on Image Processing, Institute of Electrical and Electronics Engineers, 2010, pp.1181-1190
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Conference papers

titre: 3D Knowledge-Based Segmentation Using Pose-Invariant Higher-Order Graphs
auteur: Chaohui Wang, Olivier Teboul, Fabrice Michel, Salma Essafi, Nikos Paragios
article: MICCAI 2010 - 13th International Conference on Medical Image Computing and Computer Assisted Intervention, Sep 2010, Beijing, China. pp.189-196, ⟨10.1007/978-3-642-15711-0_24⟩
DOI: DOI : 10.1007/978-3-642-15711-0_24
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titre: Model-Based Multi-view Fusion of Cinematic Flow and Optical Imaging
auteur: Mickaël Savinaud, Martin de la Gorce, S. Maitrejean, Nikos Paragios
article: 13th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2010, Sep 2010, Beijing, China. pp.668-675, ⟨10.1007/978-3-642-15745-5_82⟩
DOI: DOI : 10.1007/978-3-642-15745-5_82
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titre: Simultaneous Geometric - Iconic Registration
auteur: Aristeidis Sotiras, Yangming Ou, Ben Glocker, Christos Davatzikos, Nikos Paragios
article: 13th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2010, Sep 2010, Beijing, China. pp.676-683, ⟨10.1007/978-3-642-15745-5_83⟩
DOI: DOI : 10.1007/978-3-642-15745-5_83
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titre: Guide-Wire Extraction through Perceptual Organization of Local Segments in Fluoroscopic Images
auteur: Nicolas Honnorat, Régis Vaillant, Nikos Paragios
article: 13th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2010, Sep 2010, Beijing, China. pp.440-448, ⟨10.1007/978-3-642-15711-0_55⟩
DOI: DOI : 10.1007/978-3-642-15711-0_55
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titre: Nonlinear Embedding towards Articulated Spine Shape Inference Using Higher-Order MRFs
auteur: Samuel Kadoury, Nikos Paragios
article: 13th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2010, Sep 2010, Beijing, China. pp.579-586, ⟨10.1007/978-3-642-15711-0_72⟩
DOI: DOI : 10.1007/978-3-642-15711-0_72
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titre: Estimating Shadows with the Bright Channel Cue
auteur: Alexandros Panagoupolos, Chaohui Wang, Dimitris Samaras, Nikos Paragios
article: 11th European Conference on Computer Vision - ECCV 2010, Sep 2010, Heraklion, Greece. pp.1-12, ⟨10.1007/978-3-642-35740-4_1⟩
DOI: DOI : 10.1007/978-3-642-35740-4_1
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titre: Data fusion through cross-modality metric learning using similarity-sensitive hashing
auteur: Michael Bronstein, Alexander Bronstein, Fabrice Michel, Nikos Paragios
article: 23rd IEEE Conference on Computer Vision and Pattern Recognition - CVPR 2010, Jun 2010, San Francisco, United States. pp.3594-3601, ⟨10.1109/CVPR.2010.5539928⟩
DOI: DOI : 10.1109/CVPR.2010.5539928
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titre: Dense non-rigid surface registration using high-order graph matching
auteur: Yun Zeng, Chaohui Wang, Yang Wang, Xianfeng Gu, Dimitris Samaras, Nikos Paragios
article: 23rd IEEE Conference on Computer Vision and Pattern Recognition - CVPR 2010, Jun 2010, San Francisco, United States. pp.382-389, ⟨10.1109/CVPR.2010.5540189⟩
DOI: DOI : 10.1109/CVPR.2010.5540189
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titre: Segmentation of building facades using procedural shape priors
auteur: Olivier Teboul, Loïc Simon, Panagiotis Koutsorakis, Nikos Paragios
article: 23rd IEEE Conference on Computer Vision and Pattern Recognition - CVPR 2010, Jun 2010, San Francisco, United States. pp.3105-3112, ⟨10.1109/CVPR.2010.5540068⟩
DOI: DOI : 10.1109/CVPR.2010.5540068
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titre: Image transport regression using mixture of experts and discrete Markov random fields
auteur: Fabrice Michel, Nikos Paragios
article: 2010 IEEE 7th International Symposium on Biomedical Imaging - ISBI 2010, Apr 2010, Rotterdam, Netherlands. pp.1229-1232, ⟨10.1109/ISBI.2010.5490217⟩
DOI: DOI : 10.1109/ISBI.2010.5490217
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titre: Bioluminescence enhancement through fusion of optical imaging and cinematic video flow
auteur: Mickaël Savinaud, Aristeidis Sotiras, S. Maitrejean, Nikos Paragios
article: 2010 IEEE 7th International Symposium on Biomedical Imaging - ISBI 2010, Apr 2010, Rotterdam, Netherlands. pp.688-691, ⟨10.1109/ISBI.2010.5490081⟩
DOI: DOI : 10.1109/ISBI.2010.5490081
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titre: Multimodal inference of articulated spine models from higher order energy functions of discrete MRFS
auteur: Samuel Kadoury, Nikos Paragios
article: 2010 IEEE 7th International Symposium on Biomedical Imaging - ISBI 2010, Apr 2010, Rotterdam, Netherlands. pp.1393-1396, ⟨10.1109/ISBI.2010.5490258⟩
DOI: DOI : 10.1109/ISBI.2010.5490258
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titre: Needle tracking through higher-order MRF optimization
auteur: Tim Hauke Heibel, Ben Glocker, Nikos Paragios, Nassir Navab
article: 2010 IEEE 7th International Symposium on Biomedical Imaging - ISBI 2010, Apr 2010, Rotterdam, Netherlands. pp.624-627, ⟨10.1109/ISBI.2010.5490099⟩
DOI: DOI : 10.1109/ISBI.2010.5490099
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titre: Robust guidewire segmentation through boosting, clustering and linear programming
auteur: Nicolas Honnorat, Régis Vaillant, Nikos Paragios
article: 2010 IEEE 7th International Symposium on Biomedical Imaging - ISBI 2010, Apr 2010, Rotterdam, Netherlands. pp.924-927, ⟨10.1109/ISBI.2010.5490138⟩
DOI: DOI : 10.1109/ISBI.2010.5490138
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titre: Detecting mutually-salient landmark pairs with MRF regularization
auteur: Yangming Ou, Ahmed Besbes, Michel Billelo, M. Mansour, Christos Davatzikos, Nikos Paragios
article: 2010 IEEE 7th International Symposium on Biomedical Imaging - ISBI 2010, Apr 2010, Rotterdam, Netherlands. pp.400-403, ⟨10.1109/ISBI.2010.5490324⟩
DOI: DOI : 10.1109/ISBI.2010.5490324
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titre: Markov Random Field Optimization for Intensity-based 2D-3D Registration
auteur: Darko Zikic, Ben Glocker, Oliver Kutter, Martin Groher, Nikos Komodakis, Ali Khamene, Nikos Paragios, Nassir Navab
article: SPIE 2010, Medical Imaging 2010: Image Processing, 2010, San Diego, United States. ⟨10.1117/12.837232⟩
DOI: DOI : 10.1117/12.837232
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titre: Non-rigid Registration using Discrete MRFs: Application to Thoracic CT Images
auteur: Ben Glocker, Nikos Komodakis, Nikos Paragios, Nassir Navab
article: Workshop Evaluation of Methods for Pulmonary Image Registration, MICCAI 2010, 2010, China
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Directions of work or proceedings

titre: ECCV 2010, 11th European Conference on Computer Vision, Heraklion, Crete, Greece, September 5-11, 2010 (Part 1)
auteur: Kostas Daniilidis, Petros Maragos, Nikos Paragios
article: France. Springer, pp.8111, 2010, 978-3-642-15548-2
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titre: Inverse Problem and Imaging Journal Special Issue on Medical Image Analysis
auteur: Tony Chan, Yunmei Chen, Nikos Paragios
article: France. American Institute of Mathematical Sciences, pp.125, 2010
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2009

Journal articles

titre: Registration with Uncertainties and Statistical Modeling of Shapes with Variable Metric Kernels
auteur: Maxime Taron, Nikos Paragios, Marie-Pierre Jolly
article: IEEE Transactions on Pattern Analysis and Machine Intelligence, Institute of Electrical and Electronics Engineers, 2009, 31 (1), pp.99-113. ⟨10.1109/TPAMI.2008.36⟩
DOI: DOI : 10.1109/TPAMI.2008.36
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Reports

titre: Cue Integration and Discrete MRFs towards Knowledge-based Segmentation and Tracking
auteur: Ahmed Besbes, Nikos Paragios, Nikos Komodakis
article: [Research Report] RR-6831, INRIA. 2009, pp.24
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2008

Journal articles

titre: Performance vs computational efficiency for optimizing single and dynamic MRFs: Setting the state of the art with primal-dual strategies
auteur: Nikos Komodakis, Georgios Tziritas, Nikos Paragios
article: Computer Vision and Image Understanding, Elsevier, 2008, pp.14-29
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titre: Discrete optimization in computer vision
auteur: Nikos Paragios, Zabih Ramin
article: Computer Vision and Image Understanding, Elsevier, 2008, pp.1,2
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titre: Prior Knowledge, Level Set Representations & Visual Grouping
auteur: Mikaël Rousson, Nikos Paragios
article: International Journal of Computer Vision, Springer Verlag, 2008, 76 (3), pp.231-243. ⟨10.1007/s11263-007-0054-z⟩
DOI: DOI : 10.1007/s11263-007-0054-z
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titre: Dense image registration through MRFs and efficient linear programming
auteur: Glocker Ben, Nikos Komodakis, Georgios Tziritas, Nassir Navab, Nikos Paragios
article: Medical Image Analysis, Elsevier, 2008, pp.731-741
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Conference papers

titre: Spatio-temporal speckle reduction in ultrasound sequences
auteur: Noura Azzabou, Nikos Paragios
article: 11th International Conference on Medical Image Computing and Computer-Assisted Intervention - MICCAI 2008, Sep 2008, New-York, United States. pp.951-958, ⟨10.1007/978-3-540-85988-8_113⟩
DOI: DOI : 10.1007/978-3-540-85988-8_113
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titre: Graph commute times for image representation
auteur: Régis Behmo, Nikos Paragios, Veronique Prinet
article: CVPR 2008 - Computer Vision and Pattern Recognition, Jun 2008, Anchorage, AK, United States. pp.1-8, ⟨10.1109/CVPR.2008.4587840⟩
DOI: DOI : 10.1109/CVPR.2008.4587840
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titre: Effiziente nichtlineare Registrierung mittels diskreter Optimierung.
auteur: Ben Glocker, Nikos Komodakis, Nikos Paragios, Georgios Tziritas, Nassir Navab
article: Bildverarbeitung für die Medizin 2008, 2008, Germany. pp.87-91
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titre: Sparsity, redundancy and optimal image support towards knowledge-based segmentation.
auteur: Salma Essafi, Georg Langs, Nikos Paragios
article: CVPR 2008, 2008, United States. pp.1-7
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titre: Deformable Mosaicing for Whole-Body MRI
auteur: Christian Wachinger, Glocker Ben, Jean-Claude Zeltner, Nikos Paragios, Nikos Komodakis, Michael Sass Hansen, Nassir Navab
article: Medical Image Computing and Computer-Assisted Intervention - MICCAI 2008, 2008, New-York, United States. pp.113-121, ⟨10.1007/978-3-540-85990-1_14⟩
DOI: DOI : 10.1007/978-3-540-85990-1_14
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titre: Spatiotemporal Decomposition in Object-Space along Reconstruction in Emission Tomography
auteur: Xavier Hubert, Dominique Chambellan, Samuel Legoupil, Régine Trébossen, Jean-Robert Deverre, Nikos Paragios
article: Medical Image Computing and Computer-Assisted Intervention - MICCAI 2008, 2008, New-York, United States. pp.255-262, ⟨10.1007/978-3-540-85990-1_31⟩
DOI: DOI : 10.1007/978-3-540-85990-1_31
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titre: Knee reconstruction through efficient linear programming
auteur: Mihai Sardarescu, Nikos Paragios, Nikos Komodakis, R. Raymond, P. Hernigou, Alain Rahmouni
article: ISBI, 2008, France. pp.664 - 667
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titre: Optical flow estimation with uncertainties through dynamic MRFs
auteur: Glocker Ben, Nikos Paragios, Nikos Komodakis, Georgios Tziritas, Nassir Navab
article: Optical flow estimation with uncertainties through dynamic MRFs, 2008, United States. pp.1-8
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titre: Beyond Loose LP-Relaxations: Optimizing MRFs by Repairing Cycles
auteur: Nikos Komodakis, Nikos Paragios
article: ECCV, 2008, France. pp.806-820
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titre: Group-wise MDL based registration of small animals in video sequences
auteur: Han Yuan, Georg Langs, Nikos Paragios
article: 2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2008, Paris, France. pp.1179 - 1182
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titre: Task-Specific Functional Brain Geometry from Model Maps.
auteur: Georg Langs, Dimitris Samaras, Nikos Paragios, Jean Honorio, Nelly Alia-Klein, Dardo Tomasi, Volkowu Nora D., Rita Goldstein
article: MICCAI, 2008, United States. pp.925-933
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titre: An Application of Graph Commute Times to Image Indexing
auteur: Régis Behmo, Nikos Paragios, Veronique Prinet
article: Geoscience and Remote Sensing Symposium, 2008. IGARSS 2008. IEEE International, 2008, Boston, United States. pp.495-498, ⟨10.1109/IGARSS.2008.4779392⟩
DOI: DOI : 10.1109/IGARSS.2008.4779392
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titre: Conjoint use of coded-aperture collimators and MLEM algorithm: Towards large blood vessels reconstruction at 511 KEV
auteur: Xavier Hubert, Dominique Chambellan, Samuel Legoupil, Jean-Robert Deverre, Nikos Paragios
article: 2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2008, Paris, France. pp.1461 - 1464, ⟨10.1109/ISBI.2008.4541283⟩
DOI: DOI : 10.1109/ISBI.2008.4541283
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titre: Automatic detection of liver tumors
auteur: Pescia Daniel, Nikos Paragios, Stéphane Chemouny
article: ISBI, 2008, France. pp.672-675
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titre: Fleet: Model-based hand tracking with texture, shading and self-occlusions
auteur: Martin de la Gorce, Nikos Paragios, J. Fleet D
article: CVPR, 2008, United States. pp.1-8
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titre: Modeling the structure of multivariate manifolds: Shape maps
auteur: Georg Langs, Nikos Paragios
article: CVPR, 2008, United States. pp.1-8
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2006

Conference papers

titre: Extraction de couches de même mouvement via des techniques combinatoires
auteur: Romain Dupont, Nikos Paragios, Renaud Keriven, Philippe Fuchs
article: Reconnaissance des Formes et Intelligence Artificielle (RFIA), Jun 2006, Tours, France. pp.P
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2005

Conference papers

titre: Extraction of layers of similar motion through combinatorial techniques
auteur: Romain Dupont, Nikos Paragios, Renaud Keriven, Philippe Fuchs
article: International Workshop On Energy Minimization Methods, Nov 2005, St. Augustine, United States. pp 220-234, ⟨10.1007/11585978_15⟩
DOI: DOI : 10.1007/11585978_15
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