Publications HAL de nikos, paragios

2024

Journal articles

titre: Translational Frontiers and Clinical Opportunities of Immunologically Fitted Radiotherapy
auteur: Daphné Morel, Charlotte Robert, Nikos Paragios, Vincent Grégoire, Eric Deutsch
article: Clinical Cancer Research, 2024, 30 (11), pp.2317-2332. ⟨10.1158/1078-0432.CCR-23-3632⟩
DOI: DOI : 10.1158/1078-0432.CCR-23-3632
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Preprints, Working Papers, ...

titre: GHOST: Graph-based Higher-Order Similarity Transformation for Classification
auteur: Enzo Battistella, Maria Vakalopoulou, Nikos Paragios, Eric Deutsch
article: 2024
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2023

Journal articles

titre: StructuRegNet: Structure-Guided Multimodal 2D-3D Registration
auteur: Amaury Leroy, Alexandre Cafaro, Grégoire Gessain, Anne Champagnac, Vincent Grégoire, Eric Deutsch, Vincent Lepetit, Nikos Paragios
article: OncoImmunology, 2023, Lecture Notes in Computer Science, 14229 (1), pp.771-780. ⟨10.1007/978-3-031-43999-5_73⟩
DOI: DOI : 10.1007/978-3-031-43999-5_73
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titre: X2Vision: 3D CT Reconstruction from Biplanar X-Rays with Deep Structure Prior
auteur: Alexandre Cafaro, Quentin Spinat, Amaury Leroy, Pauline Maury, Alexandre Munoz, Guillaume Beldjoudi, Charlotte Robert, Eric Deutsch, Vincent Grégoire, Vincent Lepetit, Nikos Paragios
article: Lecture Notes in Computer Sciences, 2023, Lecture Notes in Computer Science, 14229, pp.699-709. ⟨10.1007/978-3-031-43999-5_66⟩
DOI: DOI : 10.1007/978-3-031-43999-5_66
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Conference papers

titre: Certification of Deep Learning Models for Medical Image Segmentation
auteur: Othmane Laousy, Alexandre Araujo, Guillaume Chassagnon, Nikos Paragios, Marie Pierre Revel, Maria Vakalopoulou
article: MICCAI 2023 - 26th International Conference on Medical Image Computing and Computer Assisted Intervention, Oct 2023, Vancouver (BC), Canada. pp.611-621, ⟨10.1007/978-3-031-43901-8_58⟩
DOI: DOI : 10.1007/978-3-031-43901-8_58
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titre: Differentiable Gamma Index-Based Loss Functions: Accelerating Monte-Carlo Radiotherapy Dose Simulation
auteur: Sonia Martinot, Nikos Komodakis, Maria Vakalopoulou, Norbert Bus, Charlotte Robert, Eric Deutsch, Nikos Paragios
article: Information Processing in Medical Imaging, Jun 2023, San Carlos De Bariloche, Argentina. pp.485-496, ⟨10.1007/978-3-031-34048-2_37⟩
DOI: DOI : 10.1007/978-3-031-34048-2_37
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2022

Conference papers

titre: Region-Guided CycleGANs for Stain Transfer in Whole Slide Images
auteur: Joseph Boyd, Irène Villa, Marie-Christine Mathieu, Eric Deutsch, Nikos Paragios, Maria Vakalopoulou, Stergios Christodoulidis
article: MICCAI 2022 - 25th International Conference on Medical Image Computing and Computer Assisted Intervention, Sep 2022, Singapore, Singapore. pp.356-365, ⟨10.1007/978-3-031-16434-7_35⟩
DOI: DOI : 10.1007/978-3-031-16434-7_35
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titre: End-to-End Multi-Slice-to-Volume Concurrent Registration and Multimodal Generation
auteur: Amaury Leroy, Marvin Lerousseau, Théophraste Henry, Alexandre Cafaro, Nikos Paragios, Vincent Grégoire, Eric Deutsch
article: The 25th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2022), The MICCAI Society, Sep 2022, Singapour, Singapore. pp.152-162, ⟨10.1007/978-3-031-16446-0_15⟩
DOI: DOI : 10.1007/978-3-031-16446-0_15
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2021

Journal articles

titre: COMBING: Clustering in Oncology for Mathematical and Biological Identification of Novel Gene Signatures
auteur: Enzo Battistella, Maria Vakalopoulou, Roger Sun, Théo Estienne, Marvin Lerousseau, Sergey Nikolaev, Émilie Alvarez Andres, Alexandre Carré, Stéphane Niyoteka, Charlotte Robert, Nikos Paragios, Emilie Alvarez Andres, Eric Deutsch
article: IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2021, pp.1-1. ⟨10.1109/TCBB.2021.3123910⟩
DOI: DOI : 10.1109/TCBB.2021.3123910
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titre: Deep learning for lung disease segmentation on CT: Which reconstruction kernel should be used?
auteur: Trieu-Nghi Hoang-Thi, Maria Vakalopoulou, Stergios Christodoulidis, Nikos Paragios, Marie-Pierre Revel, Guillaume Chassagnon
article: Diagnostic and Interventional Imaging, 2021, 102 (11), pp.691-695. ⟨10.1016/j.diii.2021.10.001⟩
DOI: DOI : 10.1016/j.diii.2021.10.001
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titre: Reinventing Radiation Therapy with Machine Learning and Imaging Bio-markers (Radiomics): state-ofthe-art, challenges and perspectives Authors
auteur: Laurent Dercle, Theophraste Henry, Alexandre Carré, Nikos Paragios, Eric Deutsch, Charlotte Robert
article: Methods, 2021, 188, pp.44-60. ⟨10.1016/j.ymeth.2020.07.003⟩
DOI: DOI : 10.1016/j.ymeth.2020.07.003
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titre: AI-driven quantification, staging and outcome prediction of COVID-19 pneumonia
auteur: Guillaume Chassagnon, Maria Vakalopoulou, Enzo Battistella, Stergios Christodoulidis, Trieu-Nghi Hoang-Thi, Severine Dangeard, Eric Deutsch, Fabrice Andre, Enora Guillo, Nara Halm, Stefany El Hajj, Florian Bompard, Sophie Neveu, Chahinez Hani, Ines Saab, Aliénor Campredon, Hasmik Koulakian, Souhail Bennani, Gael Freche, Maxime Barat, Aurelien Lombard, Laure Fournier, Hippolyte Monnier, Téodor Grand, Jules Gregory, Yann Nguyen, Antoine Khalil, Elyas Mahdjoub, Pierre-Yves Brillet, Stéphane Tran Ba, Valérie Bousson, Ahmed Mekki, Robert-Yves Carlier, Marie-Pierre Revel, Nikos Paragios
article: Medical Image Analysis, 2021, 67, pp.101860. ⟨10.1016/j.media.2020.101860⟩
DOI: DOI : 10.1016/j.media.2020.101860
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titre: Elastic Registration–driven Deep Learning for Longitudinal Assessment of Systemic Sclerosis Interstitial Lung Disease at CT
auteur: Guillaume Chassagnon, Maria Vakalopoulou, Alexis Régent, Mihir Sahasrabudhe, Rafael Marini, Trieu-Nghi Hoang-Thi, Anh-Tuan Dinh-Xuan, Bertrand Dunogué, Luc Mouthon, Nikos Paragios, Marie-Pierre Revel
article: Radiology, 2021, 298 (1), pp.189-198. ⟨10.1148/radiol.2020200319⟩
DOI: DOI : 10.1148/radiol.2020200319
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Conference papers

titre: Self-Supervised Representation Learning using Visual Field Expansion on Digital Pathology
auteur: Joseph Boyd, Mykola Liashuha, Eric Deutsch, Nikos Paragios, Stergios Christodoulidis, Maria Vakalopoulou
article: 2021 IEEE/CVF International Conference on Computer Vision Workshops (ICCVW), Oct 2021, Montreal, Canada. pp.639-647, ⟨10.1109/ICCVW54120.2021.00077⟩
DOI: DOI : 10.1109/ICCVW54120.2021.00077
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titre: Weakly Supervised Pan-Cancer Segmentation Tool
auteur: Marvin Lerousseau, Marion Classe, Enzo Battistella, Théo Estienne, Théophraste Henry, Amaury Leroy, Roger Sun, Maria Vakalopoulou, Jean-Yves Scoazec, Eric Deutsch, Nikos Paragios
article: Medical Image Computing and Computer Assisted Intervention, Sep 2021, Stansbroug, France. pp.248-256, ⟨10.1007/978-3-030-87237-3_24⟩
DOI: DOI : 10.1007/978-3-030-87237-3_24
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titre: Exploring Deep Registration Latent Spaces
auteur: Théo Estienne, Maria Vakalopoulou, Stergios Christodoulidis, Enzo Battistella, Théophraste Henry, Marvin Lerousseau, Amaury Leroy, Guillaume Chassagnon, Marie-Pierre Revel, Nikos Paragios, Eric Deutsch
article: DART in MICCAI 2021, the 24th International Conference on Medical Image Computing and Computer Assisted Intervention, Sep 2021, Strasbourg, France. pp.112-122, ⟨10.1007/978-3-030-87722-4_11⟩
DOI: DOI : 10.1007/978-3-030-87722-4_11
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titre: Deep Reinforcement Learning for L3 Slice Localization in Sarcopenia Assessment
auteur: Othmane Laousy, Guillaume Chassagnon, Edouard Oyallon, Nikos Paragios, Marie-Pierre Revel, Maria Vakalopoulou
article: Machine Learning in Medical Imaging @MICCAI, Sep 2021, Strasbourg, France. pp.317-326, ⟨10.1007/978-3-030-87589-3_33⟩
DOI: DOI : 10.1007/978-3-030-87589-3_33
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titre: SparseConvMIL: Sparse Convolutional Context-Aware Multiple Instance Learning for Whole Slide Image Classification
auteur: Marvin Lerousseau, Maria Vakalopoulou, Eric Deutsch, Nikos Paragios
article: MICCAI Workshop on Computational Pathology, COMPAY@MICCAI 2021, Sep 2021, Strasbourg, France
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Book sections

titre: Deep Learning for the Earth Sciences
auteur: Maria Vakalopoulou, Stergios Christodoulidis, Mihir Sahasrabudhe, Nikos Paragios
article: Deep Learning for the Earth Sciences: A Comprehensive Approach to Remote Sensing, Climate Science, and Geosciences, 1, Wiley, 2021, ⟨10.1002/9781119646181.ch9⟩
DOI: DOI : 10.1002/9781119646181.ch9
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2020

Journal articles

titre: Quantification of Cystic Fibrosis Lung Disease with Radiomics-based CT Scores
auteur: Guillaume Chassagnon, Evangelia Zacharaki, Sébastien Bommart, Pierre-Régis Burgel, Raphael Chiron, Séverine Dangeard, Nikos Paragios, Clémence Martin, Marie-Pierre Revel
article: Radiology: Cardiothoracic Imaging, 2020, 2 (6), pp.e200022. ⟨10.1148/ryct.2020200022⟩
DOI: DOI : 10.1148/ryct.2020200022
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titre: Radiomics to predict outcomes and abscopal response of patients with cancer treated with immunotherapy combined with radiotherapy using a validated signature of CD8 cells
auteur: Roger Sun, Nora Sundahl, Markus Hecht, Florian Putz, Andrea Lancia, Angela Rouyar, Marina Milic, Alexandre Carré, Enzo Battistella, Emilie Alvarez Andres, Stéphane Niyoteka, Edouard Romano, Guillaume Louvel, Jérôme Durand-Labrunie, Sophie Bockel, Rastilav Bahleda, Charlotte Robert, Celine Boutros, Maria Vakalopoulou, Nikos Paragios, Benjamin Frey, Jean-Charles Soria, Christophe Massard, Charles Ferté, Rainer Fietkau, Piet Ost, Udo Gaipl, Eric Deutsch
article: Journal for Immunotherapy of Cancer, 2020, 8 (2), pp.e001429. ⟨10.1136/jitc-2020-001429⟩
DOI: DOI : 10.1136/jitc-2020-001429
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titre: Dosimetry-Driven Quality Measure of Brain Pseudo Computed Tomography Generated From Deep Learning for MRI-Only Radiation Therapy Treatment Planning
auteur: Emilie Alvarez Andres, Lucas Fidon, Maria Vakalopoulou, Marvin Lerousseau, Alexandre Carré, Roger Sun, Guillaume Klausner, Samy Ammari, Nathan Benzazon, Sylvain Reuzé, Théo Estienne, Stéphane Niyoteka, Enzo Battistella, Angéla Rouyar, Georges Noël, Anne Beaudre, Frédéric Dhermain, Eric Deutsch, Nikos Paragios, Charlotte Robert
article: International Journal of Radiation Oncology, Biology, Physics, 2020, 108 (3), pp.813-823. ⟨10.1016/j.ijrobp.2020.05.006⟩
DOI: DOI : 10.1016/j.ijrobp.2020.05.006
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titre: Standardization of brain MR images across machines and protocols: bridging the gap for MRI-based radiomics
auteur: Alexandre Carré, Guillaume Klausner, Myriam Edjlali, Marvin Lerousseau, Jade Briend-Diop, Roger Sun, Samy Ammari, Sylvain Reuzé, Emilie Alvarez Andres, Théo Estienne, Stéphane Niyoteka, Enzo Battistella, Maria Vakalopoulou, Frédéric Dhermain, Nikos Paragios, Eric Deutsch, Catherine Oppenheim, Johan Pallud, Charlotte Robert
article: Scientific Reports, 2020, 10 (1), pp.12340. ⟨10.1038/s41598-020-69298-z⟩
DOI: DOI : 10.1038/s41598-020-69298-z
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titre: Deep Learning–based Approach for Automated Assessment of Interstitial Lung Disease in Systemic Sclerosis on CT Images
auteur: Guillaume Chassagnon, Maria Vakalopoulou, Alexis Régent, Evangelia Zacharaki, Galit Aviram, Charlotte Martin, Rafael Marini, Norbert Bus, Naïm Jerjir, Arsène Mekinian, Thông Hua-Huy, Laurence Monnier-Cholley, Nouria Benmostefa, Luc Mouthon, Anh-Tuan Dinh-Xuan, Nikos Paragios, Marie-Pierre Revel
article: Radiology: Artificial Intelligence, 2020, 2 (4), pp.e190006. ⟨10.1148/ryai.2020190006⟩
DOI: DOI : 10.1148/ryai.2020190006
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titre: Deep Learning-Based Concurrent Brain Registration and Tumor Segmentation
auteur: Théo Estienne, Marvin Lerousseau, Maria Vakalopoulou, Emilie Alvarez Andres, Enzo Battistella, Alexandre Carré, Siddhartha Chandra, Stergios Christodoulidis, Mihir Sahasrabudhe, Roger Sun, Charlotte Robert, Hugues Talbot, Nikos Paragios, Eric Deutsch
article: Frontiers in Computational Neuroscience, 2020, Multimodal Brain Tumor Segmentation and Beyond, ⟨10.3389/fncom.2020.00017⟩
DOI: DOI : 10.3389/fncom.2020.00017
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titre: Artificial intelligence applications for thoracic imaging
auteur: Guillaume Chassagnon, Maria Vakalopoulou, Nikos Paragios, Marie-Pierre Revel
article: European Journal of Radiology, 2020, 123, pp.108774. ⟨10.1016/j.ejrad.2019.108774⟩
DOI: DOI : 10.1016/j.ejrad.2019.108774
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Conference papers

titre: Self-supervised Nuclei Segmentation in Histopathological Images Using Attention
auteur: Mihir Sahasrabudhe, Stergios Christodoulidis, Roberto Salgado, Stefan Michiels, Sherene Loi, Fabrice André, Nikos Paragios, Maria Vakalopoulou
article: MICCAI 2020 - International Conference on Medical Image Computing and Computer-Assisted Intervention, Oct 2020, Lima, Peru. pp.393-402, ⟨10.1007/978-3-030-59722-1_38⟩
DOI: DOI : 10.1007/978-3-030-59722-1_38
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titre: Weakly Supervised Multiple Instance Learning Histopathological Tumor Segmentation
auteur: Marvin Lerousseau, Maria Vakalopoulou, Marion Classe, Julien Adam, Enzo Battistella, Alexandre Carré, Théo Estienne, Théophraste Henry, Eric Deutsch, Nikos Paragios
article: MICCAI 2020 - Medical Image Computing and Computer Assisted Intervention, Oct 2020, Lima, Peru. pp.470-479, ⟨10.1007/978-3-030-59722-1_45⟩
DOI: DOI : 10.1007/978-3-030-59722-1_45
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Preprints, Working Papers, ...

titre: Deep Multi-Instance Learning Using Multi-Modal Data for Diagnosis of Lymphocytosis
auteur: Mihir Sahasrabudhe, Pierre Sujobert, Evangelia I Zacharaki, Eugénie Maurin, Béatrice Grange, Laurent Jallades, Nikos Paragios, Maria Vakalopoulou
article: 2020
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titre: Deep learning based registration using spatial gradients and noisy segmentation labels
auteur: Théo Estienne, Maria Vakalopoulou, Enzo Battistella, Alexandre Carré, Théophraste Henry, Marvin Lerousseau, Charlotte Robert, Nikos Paragios, Eric Deutsch
article: 2020
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2019

Journal articles

titre: Deep learning: definition and perspectives for thoracic imaging
auteur: Maria Vakalopoulou, Guillaume Chassagnon, Nikos Paragios, Marie-Pierre Revel
article: European Radiology, 2019, 30, p. 2021-2030. ⟨10.1007/s00330-019-06564-3⟩
DOI: DOI : 10.1007/s00330-019-06564-3
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titre: Use of Elastic Registration in Pulmonary MRI for the Assessment of Pulmonary Fibrosis in Patients with Systemic Sclerosis
auteur: Guillaume Chassagnon, Charlotte Martin, Rafael Marini, Maria Vakalopoulou, Alexis Régent, Luc Mouthon, Nikos Paragios, Marie-Pierre Revel
article: Radiology, 2019, 291 (2), pp.487-492. ⟨10.1148/radiol.2019182099⟩
DOI: DOI : 10.1148/radiol.2019182099
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titre: Gene Expression High-Dimensional Clustering Towards a Novel, Robust, Clinically Relevant and Highly Compact Cancer Signature
auteur: Enzo Battistella, Maria Vakalopoulou, Théo Estienne, Marvin Lerousseau, Roger Sun, Charlotte Robert, Nikos Paragios, Eric Deutsch
article: Lecture Notes in Computer Science, 2019, Lecture Notes in Computer Science, 11465, pp.462-474. ⟨10.1007/978-3-030-17938-0_41⟩
DOI: DOI : 10.1007/978-3-030-17938-0_41
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Conference papers

titre: U-ReSNet: Ultimate Coupling of Registration and Segmentation with Deep Nets
auteur: Théo Estienne, Maria Vakalopoulou, Stergios Christodoulidis, Enzo Battistella, Marvin Lerousseau, Alexandre Carre, Guillaume Klausner, Roger Sun, Charlotte Robert, Stavroula Mougiakakou, Nikos Paragios, Eric Deutsch
article: MICCAI 2019: Medical Image Computing and Computer Assisted Intervention – MICCAI 2019, MICCAI, Oct 2019, Shenzhen, China. pp.310-319, ⟨10.1007/978-3-030-32248-9_35⟩
DOI: DOI : 10.1007/978-3-030-32248-9_35
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titre: Image Registration of Satellite Imagery with Deep Convolutional Neural Networks
auteur: Maria Vakalopoulou, Stergios Christodoulidis, Mihir Sahasrabudhe, Stavroula Mougiakakou, Nikos Paragios
article: IGARSS 2019 - 2019 IEEE International Geoscience and Remote Sensing Symposium, Jul 2019, Yokohama, France. pp.4939-4942, ⟨10.1109/IGARSS.2019.8898220⟩
DOI: DOI : 10.1109/IGARSS.2019.8898220
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titre: Gene Expression High-Dimensional Clustering towards a Novel, Robust, Clinically Relevant and Highly Compact Cancer Signature
auteur: Enzo Battistella, Maria Vakalopoulou, Théo Estienne, Marvin Lerousseau, Roger Sun, Charlotte Robert, Nikos Paragios, Eric Deutsch
article: IWBBIO 2019 - 7th International Work-Conference on Bioinformatics and Biomedical Engineering, May 2019, Granada, Spain
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Book sections

titre: Tighter continuous relaxations for MAP inference in discrete MRFs: A survey
auteur: Hariprasad Kannan, Nikos Komodakis, Nikos Paragios
article: Handbook of Numerical Analysis: Processing, Analyzing and Learning of Images, Shapes, and Forms: Part 2, Volume 20, pages 351 - 400, Elsevier, https://www.sciencedirect.com/science/article/pii/S1570865919300092, Elsevier, 2019, ⟨10.1016/bs.hna.2019.06.001⟩
DOI: DOI : 10.1016/bs.hna.2019.06.001
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2018

Journal articles

titre: A radiomics approach to assess tumour-infiltrating CD8 cells and response to anti-PD-1 or anti-PD-L1 immunotherapy: an imaging biomarker, retrospective multicohort study
auteur: Roger Sun, Elaine Johanna Limkin, Maria Vakalopoulou, Laurent Dercle, Stéphane Champiat, Shan Rong Han, Loic Verlingue, David Brandao, Andrea Lancia, Samy Ammari, Antoine Hollebecque, Jean-Yves Scoazec, Aurélien Marabelle, Christophe Massard, Jean-Charles Soria, Charlotte Robert, Nikos Paragios, Éric Deutsch, Charles Ferté
article: Lancet Oncology, 2018, 19 (9), pp.1180-1191. ⟨10.1016/S1470-2045(18)30413-3⟩
DOI: DOI : 10.1016/S1470-2045(18)30413-3
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titre: Demystification of AI-driven medical image interpretation: past, present and future
auteur: Peter Savadjiev, Jaron Chong, Anthony Dohan, Maria Vakalopoulou, Caroline Reinhold, Nikos Paragios, Benoit Gallix
article: European Radiology, 2018, 29, p. 1616-1624. ⟨10.1007/s00330-018-5674-x⟩
DOI: DOI : 10.1007/s00330-018-5674-x
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titre: Graph-Based Slice-to-Volume Deformable Registration
auteur: Enzo Ferrante, Nikos Paragios
article: International Journal of Computer Vision, 2018, 126 (1), pp.36-58. ⟨10.1007/s11263-017-1040-8⟩
DOI: DOI : 10.1007/s11263-017-1040-8
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Conference papers

titre: Linear and Deformable Image Registration with 3D Convolutional Neural Networks
auteur: Stergios Christodoulidis, Mihir Sahasrabudhe, Maria Vakalopoulou, Guillaume Chassagnon, Marie-Pierre Revel, Stavroula Mougiakakou, Nikos Paragios
article: Reconstruction and Analysis of Moving Body Organs, 21th International Conference on Medical Image Computing and Computer Assisted Intervention 2018, Sep 2018, Grenada, Spain
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titre: AtlasNet: Multi-atlas Non-linear Deep Networks for Medical Image Segmentation
auteur: Maria Vakalopoulou, Guillaume Chassagnon, Norbert Bus, Rafael Marini Silva, Evangelia I. Zacharaki, Marie-Pierre Revel, Nikos Paragios
article: International Conference on Medical Image Computing and Computer-Assisted Intervention, Sep 2018, Granada, Spain
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titre: Context Aware 3D CNNs for Brain Tumor Segmentation
auteur: Siddhartha Chandra, Maria Vakalopoulou, Lucas Fidon, Enzo Battistella, Théo Estienne, Roger Sun, Charlotte Robert, Eric Deutsch, Nikos Paragios
article: MICCAI Brainlesion Workshop, Sep 2018, Granada, Spain
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titre: Deforming Autoencoders: Unsupervised Disentangling of Shape and Appearance
auteur: Zhixin Shu, Mihir Sahasrabudhe, Riza Alp Güler, Dimitris Samaras, Nikos Paragios, Iasonas Kokkinos
article: The European Conference on Computer Vision, Sep 2018, Munich, Germany
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titre: Stacked Encoder-Decoders for Accurate Semantic Segmentation of Very High Resolution Satellite Datasets
auteur: Maria Papadomanolaki, Maria Vakalopoulou, Nikos Paragios, Konstantinos Karantzalos
article: IGARSS 2018 - 38th annual International Geoscience and Remote Sensing Symposium, Jul 2018, Valencia, Spain. pp.1-4
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titre: Continuous Relaxation of MAP Inference: A Nonconvex Perspective
auteur: Ð.Khuê Lê-Huu, Nikos Paragios
article: CVPR 2018 - IEEE Conference on Computer Vision and Pattern Recognition, Jun 2018, Salt Lake City, United States. pp.1-19, ⟨10.1109/CVPR.2018.00580⟩
DOI: DOI : 10.1109/CVPR.2018.00580
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titre: Deep patch-based priors under a fully convolutional encoder-decoder architecture for interstitial lung disease segmentation
auteur: Maria Vakalopoulou, Guillaume Chassagnon, Nikos Paragios, Marie-Pierre Revel, Evangelia I. Zacharaki
article: ISBI’18 - IEEE International Symposium on Biomedical Imaging, Apr 2018, Washington, D.C., United States
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Preprints, Working Papers, ...

titre: Identifying the Best Machine Learning Algorithms for Brain Tumor Segmentation, Progression Assessment, and Overall Survival Prediction in the BRATS Challenge
auteur: Spyridon Bakas, Mauricio Reyes, Enzo Battistella, Siddhartha Chandra, Théo Estienne, Lucas Fidon, Maria Vakalopoulou, Roger Sun, Et Al., Éric Deutsch, Charlotte Robert, Nikos Paragios, Bjoern Menze
article: 2018
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2017

Journal articles

titre: Computational medical imaging (radiomics) and potential for immuno-oncology
auteur: Roger Sun, Elaine Johanna Limkin, Laurent Dercle, Sylvain Reuzé, Evangelia I Zacharaki, Cyrus Chargari, Antoine Schernberg, Anne-Sophie Dirand, Anthony Alexis, Nikos Paragios, Eric Deutsch, Charles Ferté, Charlotte Robert
article: Cancer/Radiothérapie, 2017, 21 (6-7), pp.648-654. ⟨10.1016/j.canrad.2017.07.035⟩
DOI: DOI : 10.1016/j.canrad.2017.07.035
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titre: Slice-to-volume medical image registration: A survey
auteur: Enzo Ferrante, Nikos Paragios
article: Medical Image Analysis, 2017, 39, pp.101 - 123. ⟨10.1016/j.media.2017.04.010⟩
DOI: DOI : 10.1016/j.media.2017.04.010
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titre: Promises and challenges for the implementation of computational medical imaging (radiomics) in oncology
auteur: Elaine Johanna Limkin, Roger Sun, Laurent Dercle, Evangelia I Zacharaki, Charlotte Robert, Sylvain Reuzé, Antoine Schernberg, Nikos Paragios, Eric Deutsch, Charles Ferté
article: Annals of Oncology, 2017, 28 (6), pp.1191 - 1206. ⟨10.1093/annonc/mdx034⟩
DOI: DOI : 10.1093/annonc/mdx034
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titre: A Discrete MRF Framework for Integrated Multi-Atlas Registration and Segmentation
auteur: Stavros Alchatzidis, Aristeidis Sotiras, Evangelia I. Zacharaki, Nikos Paragios
article: International Journal of Computer Vision, 2017, 121, pp.169-181. ⟨10.1007/s11263-016-0925-2⟩
DOI: DOI : 10.1007/s11263-016-0925-2
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titre: Automatic single- and multi-label enzymatic function prediction by machine learning
auteur: Shervine Amidi, Afshine Amidi, Dimitrios Vlachakis, Nikos Paragios, Evangelia I. Zacharaki
article: PeerJ, 2017, 5, pp.1-16. ⟨10.7717/peerj.3095⟩
DOI: DOI : 10.7717/peerj.3095
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Conference papers

titre: Deformable Registration through Learning of Context-Specific Metric Aggregation
auteur: Enzo Ferrante, Puneet K Dokania, Rafael Marini, Nikos Paragios
article: Machine Learning in Medical Imaging Worlshop. MLMI (MICCAI 2017), Sep 2017, Quebec City, Canada
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titre: Integrating edge/boundary priors with classification scores for building detection in very high resolution data
auteur: Maria Vakalopoulou, Norbert Bus, Konstantinos Karantzalos, Nikos Paragios
article: IEEE International geoscience and remote sensing symposium (IGARSS), Jul 2017, Fort Worth, TX, United States. pp.3309-3312, ⟨10.1109/IGARSS.2017.8127705⟩
DOI: DOI : 10.1109/IGARSS.2017.8127705
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titre: Alternating Direction Graph Matching
auteur: Ð.Khuê Lê-Huu, Nikos Paragios
article: IEEE Conference on Computer Vision and Pattern Recognition (CVPR), Jul 2017, Honolulu, United States. ⟨10.1109/cvpr.2017.522⟩
DOI: DOI : 10.1109/cvpr.2017.522
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titre: Newton-type Methods for Inference in Higher-Order Markov Random Fields
auteur: Hariprasad Kannan, Nikos Komodakis, Nikos Paragios
article: IEEE International Conference on Computer Vision and Pattern Recognition, Jul 2017, Honolulu, United States. pp.7224 - 7233
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2016

Journal articles

titre: Higher-order Graph Principles towards Non-rigid Surface Registration
auteur: Yun Zeng, Chaohui Wang, Xianfeng Gu, Dimitris Samaras, Nikos Paragios
article: IEEE Transactions on Pattern Analysis and Machine Intelligence, 2016, 38 (12), pp.2416 - 2429. ⟨10.1109/TPAMI.2016.2528240⟩
DOI: DOI : 10.1109/TPAMI.2016.2528240
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titre: A Probabilistic Atlas of Diffuse WHO Grade II Glioma Locations in the Brain
auteur: Sarah Parisot, Amélie Darlix, Cédric Baumann, Sonia Zouaoui, Yordanka Yordanova, Marie Blonski, Valérie Rigau, Stéphane Chemouny, Luc Taillandier, Luc Bauchet, Hugues Duffau, Nikos Paragios
article: PLoS ONE, 2016, 11 (1), pp.e0144200. ⟨10.1371/journal.pone.0144200⟩
DOI: DOI : 10.1371/journal.pone.0144200
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titre: Graph-Based Registration, Change Detection, and Classification in Very High Resolution Multitemporal Remote Sensing Data
auteur: Maria Vakalopoulou, Konstantinos Karantzalos, Nikos Komodakis, Nikos Paragios
article: IEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensing, 2016, 9, pp.2940 - 2951. ⟨10.1109/JSTARS.2016.2557081⟩
DOI: DOI : 10.1109/JSTARS.2016.2557081
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titre: (Hyper)-Graphical Models in Biomedical Image Analysis
auteur: Nikos Paragios, Enzo Ferrante, Ben Glocker, Nikos Komodakis, Sarah Parisot, Evangelia I. Zacharaki
article: Medical Image Analysis, 2016, 33, pp.102-106. ⟨10.1016/j.media.2016.06.028⟩
DOI: DOI : 10.1016/j.media.2016.06.028
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Conference papers

titre: Comparison of Multi-resolution Analysis Patterns for Texture Classification of Breast Tumors Based On DCE-MRI
auteur: Alexia Tzalavra, Kalliopi Dalakleidi, Evangelia I. Zacharaki, Nikolaos Tsiaparas, Fotios Constantinidis, Nikos Paragios, Konstantina S. Nikita
article: MICCAI 2016 - 7th International Workshop on Machine Learning in Medical Imaging, Oct 2016, Athens, Greece. pp.296-304, ⟨10.1007/978-3-319-47157-0_36⟩
DOI: DOI : 10.1007/978-3-319-47157-0_36
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titre: Rigid Slice-To-Volume Medical Image Registration through Markov Random Fields
auteur: Roque Porchetto, Franco Stramana, Enzo Ferrante, Nikos Paragios
article: 19th Int Conf on Med Image Comp and Comp-Assisted Intervent (MICCAI) / Int Workshop on Med Comp Vis (MCV) / 3rd Int Workshop on Bayesian and Graph Models for Biomedical Imaging (BAMBI), Oct 2016, Athens, Greece. pp.172-185, ⟨10.1007/978-3-319-61188-4_16⟩
DOI: DOI : 10.1007/978-3-319-61188-4_16
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titre: Deformable group-wise registration using a physiological model: application to DIffusion-Weighted MRI
auteur: Evgenios N. Kornaropoulos, Evangelia I. Zacharaki, Pierre Zerbib, Chieh Lin, Alain Rahmouni, Nikos Paragios
article: ICIP 2016 - IEEE International Conference on Image Processing, Sep 2016, Phoenix, Arizona, United States. pp.2345-2349, ⟨10.1109/icip.2016.7532778⟩
DOI: DOI : 10.1109/icip.2016.7532778
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titre: Simultaneous registration, segmentation and change detection from multisensor, multitemporal satellite image pairs.
auteur: Maria Vakalopoulou, Christos Platias, Maria Papadomanolaki, Nikos Paragios, Konstantinos Karantzalos
article: International Geoscience and Remote Sensing Symposium (IGARSS), Jul 2016, Beijing, China. ⟨10.1109/IGARSS.2016.7729469⟩
DOI: DOI : 10.1109/IGARSS.2016.7729469
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titre: Optimal estimation of diffusion in DW-MRI by high-order MRF-based joint deformable registration and diffusion modeling
auteur: Evgenios N. Kornaropoulos, Evangelia I. Zacharaki, Pierre Zerbib, Chieh Lin, Alain Rahmouni, Nikos Paragios
article: WBIR 2016 - 7th International Workshop on Biomedical Image Registration, Jul 2016, Las Vegas, Nevada, United States
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titre: A Machine Learning Methodology for Enzyme Functional Classification Combining Structural and Protein Sequence Descriptors
auteur: Afshine Amidi, Shervine Amidi, Dimitrios Vlachakis, Nikos Paragios, Evangelia I. Zacharaki
article: IWBBIO 2016 - 4th International Conference Bioinformatics and Biomedical Engineering, Apr 2016, Granada, Spain. pp.728-738, ⟨10.1007/978-3-319-31744-1_63⟩
DOI: DOI : 10.1007/978-3-319-31744-1_63
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titre: Sub-cortical brain structure segmentation using F-CNN's
auteur: Mahsa Shakeri, Stavros Tsogkas, Enzo Ferrante, Sarah Lippe, Samuel Kadoury, Nikos Paragios, Iasonas Kokkinos
article: ISBI 2016 - International Symposium on Biomedical Imaging, 2016, Prague, Czech Republic
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titre: Prior-based Coregistration and Cosegmentation
auteur: Mahsa Shakeri, Enzo Ferrante, Stavros Tsogkas, Sarah Lippe, Samuel Kadoury, Iasonas Kokkinos, Nikos Paragios
article: MICCAI 2016 - 19th International Conference on Medical Image Computing and Computer Assisted Intervention, 2016, Athens, Greece
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Books

titre: (Hyper)-Graphs Inference through Convex Relaxations and Move Making Algorithms: Contributions and Applications in Artificial Vision
auteur: Nikos Komodakis, M. Pawan Kumar, Nikos Paragios
article: Know Publishers, 10 (1), pp.114, 2016, Foundations and Trends® in Computer Graphics and Vision, 978-1-68083-139-9. ⟨10.1561/0600000066⟩
DOI: DOI : 10.1561/0600000066
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2015

Journal articles

titre: Learning Grammars for Architecture-Specific Facade Parsing
auteur: Raghudeep Gadde, Renaud Marlet, Nikos Paragios
article: International Journal of Computer Vision, 2015, 117 (3), pp.290-316. ⟨10.1007/s11263-016-0887-4⟩
DOI: DOI : 10.1007/s11263-016-0887-4
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titre: Compressed-sensing-based content-driven hierarchical reconstruction: Theory and application to C-arm cone-beam tomography
auteur: Hélène Langet, Cyril Riddell, Aymeric Reshef, Yves Trousset, Arthur Tenenhaus, Elisabeth Lahalle, Gilles Fleury, Nikos Paragios
article: Medical Physics, 2015, 42 (9), pp.5222-5237. ⟨10.1118/1.4928144⟩
DOI: DOI : 10.1118/1.4928144
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titre: Guest Editors' Introduction: Special Section on Higher Order Graphical Models in Computer Vision
auteur: Karteek Alahari, Dhruv Batra, Srikumar Ramalingam, Nikos Paragios, Richard Zemel
article: IEEE Transactions on Pattern Analysis and Machine Intelligence, 2015, 37 (7), pp.1321-1322. ⟨10.1109/TPAMI.2015.2434651⟩
DOI: DOI : 10.1109/TPAMI.2015.2434651
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titre: Slice-to-Volume Deformable Registration: Efficient one shot consensus between plane selection and in-plane deformation
auteur: Enzo Ferrante, Vivien Fecamp, Nikos Paragios
article: International Journal of Computer Assisted Radiology and Surgery, 2015, 10 (6), pp.791-800. ⟨10.1007/s11548-015-1205-2⟩
DOI: DOI : 10.1007/s11548-015-1205-2
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Conference papers

titre: Graph-Based Motion-Driven Segmentation of the Carotid Atherosclerotique Plaque in 2D Ultrasound Sequences
auteur: Aimilia Gastounioti, Aristeidis Sotiras, Konstantina S. Nikita, Nikos Paragios
article: Medical Image Computing and Computer-Assisted Intervention – MICCAI 2015, Oct 2015, Munich, Germany. ⟨10.1007/978-3-319-24574-4_66⟩
DOI: DOI : 10.1007/978-3-319-24574-4_66
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titre: Simultaneous Linear and Deformable Registration
auteur: Vivien Fécamp, Aristeidis Sotiras, Nikos Paragios
article: Medical Imaging Computing and Computer Assisted Interventions, Oct 2015, Munich, Germany
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titre: Building detection in very high resolution multispectral data with deep learning features
auteur: Maria Vakalopoulou, Konstantinos Karantzalos, Nikos Komodakis, Nikos Paragios
article: Geoscience and Remote Sensing Symposium (IGARSS), 2015 IEEE International, Jul 2015, Milan, Italy. pp.1873-1876, ⟨10.1109/IGARSS.2015.7326158⟩
DOI: DOI : 10.1109/IGARSS.2015.7326158
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titre: Simultaneous Registration and Change Detection in Multitemporal, Very High Resolution Remote Sensing Data
auteur: Maria Vakalopoulou, Konstantinos Karatzalos, Nikos Komodakis, Nikos Paragios
article: 2015 IEEE Conference on Computer Vision and Pattern Recognition Workshops (CVPRW), Jun 2015, Boston, United States. pp.61-69, ⟨10.1109/CVPRW.2015.7301384⟩
DOI: DOI : 10.1109/CVPRW.2015.7301384
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titre: Local atlas selection for discrete multi-atlas segmentation
auteur: Stavros Alchatzidis, Aristeidis Sotiras, Nikos Paragios
article: International Symposium on Biomedical Imaging, Apr 2015, New York, United States. ⟨10.1109/isbi.2015.7163888⟩
DOI: DOI : 10.1109/isbi.2015.7163888
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titre: Quasi real-time sub-space 3D deformable fusion
auteur: Bharat Singh, Stavros Alchatzidis, Nikos Paragios
article: Biomedical Imaging (ISBI), 2015 IEEE 12th International Symposium on, Apr 2015, New York, NY, United States. ⟨10.1109/ISBI.2015.7164000⟩
DOI: DOI : 10.1109/ISBI.2015.7164000
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titre: Modular linear iconic matching using higher order graphs
auteur: Vivien Fecamp, Aristeidis Sotiras, Nikos Paragios
article: ISBI 2015 - IEEE 12th International Symposium on Biomedical Imaging, Apr 2015, New York, United States. pp.1097 - 1101, ⟨10.1109/ISBI.2015.7164063⟩
DOI: DOI : 10.1109/ISBI.2015.7164063
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titre: Implicit Planar and In-Plane Deformable Mapping in Medical Images Through High Order Graphs
auteur: Enzo Ferrante, Vivien Fecamp, Nikos Paragios
article: IEEE International Symposium on BIOMEDICAL IMAGING: From Nano to Macro (ISBI), Apr 2015, Ney York, United States
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Book sections

titre: Monte carlo sampling for the segmentation of tubular structures
auteur: Charles Florin, Nikos Paragios, James Williams
article: Handbook of biomedical imaging : methodologies and clinical research, Springer, pp.263-275, 2015, 9780387097497; 9780387097480. ⟨10.1007/978-0-387-09749-7_14⟩
DOI: DOI : 10.1007/978-0-387-09749-7_14
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titre: Diffusion tensor estimation, regularization and classification
auteur: Radhouène Neji, Noura Azzabou, Gilles Fleury, Nikos Paragios
article: Handbook of biomedical imaging : methodologies and clinical research, Springer, pp.437-454, 2015, 9780387097497; 9780387097480. ⟨10.1007/978-0-387-09749-7_24⟩
DOI: DOI : 10.1007/978-0-387-09749-7_24
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Books

titre: Handbook of Biomedical Imaging: Methodologies and Clinical Research
auteur: Nikos Paragios, Jim Duncan, Nicholas Ayache
article: Paragios, Nikos and Duncan, Jim and Ayache, Nicholas. Springer, pp.590, 2015, 978-0-387-09748-0. ⟨10.1007/978-0-387-09749-7⟩
DOI: DOI : 10.1007/978-0-387-09749-7
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Reports

titre: (Hyper)-Graphs Inference via Convex Relaxations and Move Making Algorithms: Contributions and Applications in artificial vision
auteur: Nikos Komodakis, Pawan Kumar, Nikos Paragios
article: [Research Report] RR-8798, Inria. 2015, pp.65
DOI: DOI : 10.1561/0600000066
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titre: Graph Based Slice-to-Volume Deformable Registration
auteur: Enzo Ferrante, Nikos Paragios
article: [Research Report] RR-8803, INRIA Saclay; Center for Visual Computing, CentraleSupelec, Inria, Université Paris-Saclay. 2015, pp.30
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titre: Higher-order Graph Principles towards Non-rigid Surface Registration
auteur: Yun Zeng, Chaohui Wang, Xianfeng Gu, Dimitris Samaras, Nikos Paragios
article: [Research Report] RR-8607, INRIA Saclay - Ile-de-France; INRIA. 2015, pp.31
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2014

Journal articles

titre: A Framework for Efficient Structured Max-Margin Learning of High-Order MRF models
auteur: Nikos Komodakis, Bo Xiang, Nikos Paragios
article: IEEE Transactions on Pattern Analysis and Machine Intelligence, 2014, 37 (7), pp.1425-1441. ⟨10.1109/TPAMI.2014.2368990⟩
DOI: DOI : 10.1109/TPAMI.2014.2368990
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titre: Concurrent tumor segmentation and registration with uncertainty-based sparse non-uniform graphs
auteur: Sarah Parisot, William Wells, Stéphane Chemouny, Hugues Duffau, Nikos Paragios
article: Medical Image Analysis, 2014, 18 (4), pp.647 - 659. ⟨10.1016/j.media.2014.02.006⟩
DOI: DOI : 10.1016/j.media.2014.02.006
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titre: An Explicit Shape-constrained MRF-based Contour Evolution Method for 2D Medical Image Segmentation
auteur: Deepak Chittajallu, Nikos Paragios, Ioannis Kakadiaris
article: IEEE Journal of Biomedical and Health Informatics, 2014, pp.2168-2194. ⟨10.1109/JBHI.2013.2257820⟩
DOI: DOI : 10.1109/JBHI.2013.2257820
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Conference papers

titre: Discrete Multi Atlas Segmentation using Agreement Constraints
auteur: Stavros Alchatzidis, Aristeidis Sotiras, Nikos Paragios
article: British Machine Vision Conference, British Machine Vision Association, Sep 2014, Nottingham, United Kingdom
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titre: Discrete Visual Perception
auteur: Nikos Paragios, Nikos Komodakis
article: International Conference on Pattern Recognition, Aug 2014, Stockholm, Sweden. pp.1-7, ⟨10.1109/icpr.2014.13⟩
DOI: DOI : 10.1109/icpr.2014.13
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titre: Discriminative learning of deformable contour models
auteur: Haithem Boussaid, Iasonas Kokkinos, Nikos Paragios
article: Int.l Symposium on Biomedical Imaging (ISBI), Apr 2014, Bejing, China. pp.624 - 628, ⟨10.1109/ISBI.2014.6867948⟩
DOI: DOI : 10.1109/ISBI.2014.6867948
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Patents

titre: Method and device for elastic registration between a two-dimensional digital image and a slice of a three-dimensional volume with overlapping content
auteur: Nikos Paragios, Enzo Ferrante, Rafael Marini Silva
article: United States, Patent n° : US 2014/0192046 A1. 2014, pp.12
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Reports

titre: A Framework for Efficient Structured Max-Margin Learning of High-Order MRF Models
auteur: Nikos Komodakis, Bo Xiang, Nikos Paragios
article: [Research Report] RR-8645, Ecole de Ponts-ParisTech; Ecole Centrale de Paris; Inria Saclay Ile de France; INRIA. 2014, pp.1 - 34
DOI: DOI : 10.1109/TPAMI.2014.2368990
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2013

Journal articles

titre: Spine Segmentation in Medical Images Using Manifold Embeddings and Higher-Order MRFs
auteur: Samuel Kadoury, Hubert Labelle, Nikos Paragios
article: IEEE Transactions on Medical Imaging, 2013, 32 (7), pp.1227-1238. ⟨10.1109/TMI.2013.2244903⟩
DOI: DOI : 10.1109/TMI.2013.2244903
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titre: Deformable Medical Image Registration: A Survey
auteur: Aristeidis Sotiras, Christos Davatzikos, Nikos Paragios
article: IEEE Transactions on Medical Imaging, 2013, 32 (7), pp.1153-1190. ⟨10.1109/TMI.2013.2265603⟩
DOI: DOI : 10.1109/TMI.2013.2265603
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titre: Simultaneous Cast Shadows, Illumination and Geometry Inference Using Hypergraphs
auteur: A. Panagopoulos, Chaohui Wang, Dimitris Samaras, Nikos Paragios
article: IEEE Transactions on Pattern Analysis and Machine Intelligence, 2013, 35 (2), pp.437-449. ⟨10.1109/TPAMI.2012.110⟩
DOI: DOI : 10.1109/TPAMI.2012.110
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titre: Parsing Facades with Shape Grammars and Reinforcement Learning
auteur: Olivier Teboul, Iasonas Kokkinos, Loïc Simon, Koutsourakis Panagiotis, Nikos Paragios
article: IEEE Transactions on Pattern Analysis and Machine Intelligence, 2013, 35 (7), pp.1744-1756. ⟨10.1109/TPAMI.2012.252⟩
DOI: DOI : 10.1109/TPAMI.2012.252
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titre: Markov Random Field Modeling, Inference & Learning in Computer Vision & Image Understanding: A Survey
auteur: Chaohui Wang, Nikos Komodakis, Nikos Paragios
article: Computer Vision and Image Understanding, 2013, 117 (11), pp.1610-1627. ⟨10.1016/j.cviu.2013.07.004⟩
DOI: DOI : 10.1016/j.cviu.2013.07.004
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Conference papers

titre: Uncertainty-driven Efficiently-Sampled Sparse Graphical Models for Concurrent Tumor Segmentation and Atlas Registration
auteur: Sarah Parisot, William Wells Iii, Stéphane Chemouny, Hugues Duffau, Nikos Paragios
article: ICCV - 14th International Conference on Computer Vision, Dec 2013, Sydney, Australia
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titre: A Generic Deformation Model for Dense Non-Rigid Surface Registration: a Higher-Order MRF-based Approach
auteur: Yun Zeng, Chaohui Wang, David Gu, Dimitris Samaras, Nikos Paragios
article: ICCV 2013 - IEEE International Conference on Computer Vision, Dec 2013, Sydney, Australia. pp.3360-3367, ⟨10.1109/ICCV.2013.417⟩
DOI: DOI : 10.1109/ICCV.2013.417
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titre: Sparse classification with MRI based markers for neuromuscular disease categorization
auteur: Katerina Gkirtzou, Jean-François Deux, Guillaume Bassez, Aristeidis Sotiras, Alain Rahmouni, Thibault Varacca, Nikos Paragios, Matthew Blaschko
article: 4th International Workhop on Machine Learning in Medical Imaging, Sep 2013, Nagoya, Japan
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titre: Non-rigid 2D-3D Medical Image Registration using Markov Random Fields
auteur: Enzo Ferrante, Nikos Paragios
article: 16th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2013, Sep 2013, Nagoya, Japan. pp.163-170
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titre: Discriminative Parameter Estimation for Random Walks Segmentation
auteur: Pierre-Yves Baudin, Danny Goodman, Puneet Kumar, Noura Azzabou, Pierre G. Carlier, Nikos Paragios, M. Pawan Kumar
article: 16th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2013), Sep 2013, Nagoya, Japan. 8p
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titre: Rapid Mode Estimation for 3D Brain MRI Tumor Segmentation
auteur: Haithem Boussaid, Iasonas Kokkinos, Nikos Paragios
article: Energy Minimization Methods in Computer Vision and Pattern Recognition, Aug 2013, Lund, Sweden
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titre: Pose Invariant Deformable Shape Priors Using L1 Higher Order Sparse Graphs
auteur: Bo Xiang, Nikos Komodakis, Nikos Paragios
article: 9th International Symposium on Visual Computing - ISVC 2013, Jul 2013, Rethymnon, Greece
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titre: Nonlinear diffusion constraints for reconstructing subsampled rotational angiography data
auteur: Hélène Langet, Aymeric Reshef, Cyril Riddell, Yves Trousset, Arthur Tenenhaus, Elisabeth Lahalle, Gilles Fleury, Nikos Paragios
article: Fully3D 2013, Jun 2013, Lake Tahoe, California, United States. pp.38-41
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Book sections

titre: Modeling Shapes with Higher-Order Graphs: Methodology and Applications
auteur: Chaohui Wang, Yun Zeng, Dimitris Samaras, Nikos Paragios
article: Shape Perception in Human and Computer Vision: An Interdisciplinary Perspective, Sven J. Dickinson and Zygmunt Pizlo, pp.459-471, 2013
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Books

titre: International Journal of Computer Vision - Special Issue : Novel Representations, Methods, and Algorithms in Computer Vision
auteur: Kostas Daniilidis, Petros Maragos, Nikos Paragios
article: Springer, 103 (2), pp.177-266, 2013
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Reports

titre: Discriminative Parameter Estimation for Random Walks Segmentation: Technical Report
auteur: Pierre-Yves Baudin, Danny Goodman, Puneet Kumar, Noura Azzabou, Pierre G. Carlier, Nikos Paragios, M. Pawan Kumar
article: [Research Report] 2013
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2012

Conference papers

titre: Image contextual representation and matching through hierarchies and higher order graphs
auteur: Jose Rubio, Joan Serrat, Antonio López, Nikos Paragios
article: 21st International Conference on Pattern Recognition - ICPR 2012, Nov 2012, Tsukuba, Japan. pp.2664 - 2667
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titre: MRF-Based blind image deconvolution
auteur: Nikos Komodakis, Nikos Paragios
article: 11th Asian Conference on Computer Vision - ACCV 2012, Nov 2012, Daejeon, North Korea. pp.361-374
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titre: Bag-of-multimedia-words for image classification
auteur: Amel Znaidia, Aymen Shabou, Hervé Le Borgne, Céline Hudelot, Nikos Paragios
article: Proceedings of the 21st International Conference on Pattern Recognition, ICPR 2012, Nov 2012, Tsukuba, Japan. pp.1509-1512
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titre: High-Level Bottom-Up Cues for Top-Down Parsing of Facade Images
auteur: David Ok, Mateusz Koziński, Renaud Marlet, Nikos Paragios
article: 3DIMPVT, Oct 2012, Zürich, Switzerland. pp.N/A
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titre: Compressed Sensing Dynamic Reconstruction in Rotational Angiography
auteur: Hélène Langet, Cyril Riddell, Yves Trousset, Arthur Tenenhaus, Elisabeth Lahalle, Gilles Fleury, Nikos Paragios
article: MICCAI'12, Oct 2012, Nice, France. pp.223-230, ⟨10.1007/978-3-642-33415-3_28⟩
DOI: DOI : 10.1007/978-3-642-33415-3_28
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titre: Similarity-based appearance-prior for fitting a subdivision mesh in gene expression images.
auteur: Yen H. Le, Uday Kurkure, Nikos Paragios, Tao Ju, James P. Carson, Ioannis A. Kakadiaris
article: Medical Image Computing and Computer-Assisted Intervention - MICCAI 2012, Oct 2012, Nice, France. pp.577-84, ⟨10.1007/978-3-642-33415-3_71⟩
DOI: DOI : 10.1007/978-3-642-33415-3_71
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titre: Joint Tumor Segmentation and Dense Deformable Registration of Brain MR Images
auteur: Sarah Parisot, Hugues Duffau, Stéphane Chemouny, Nikos Paragios
article: MICCAI - 15th International Conference on Medical Image Computing and Computer-Assisted Intervention - 2012, Oct 2012, Nice, France. pp.651-658, ⟨10.1007/978-3-642-33418-4_80⟩
DOI: DOI : 10.1007/978-3-642-33418-4_80
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titre: Tomographic Reconstruction with L1-Minimization Strategy for Rotational Angiography
auteur: Hélène Langet, Cyril Riddell, Arthur Tenenhaus, Yves Trousset, Elisabeth Lahalle, Gilles Fleury, Nikos Paragios
article: 20th International Conference on computational statistics (COMPSTAT'12), Aug 2012, Limassol, Cyprus
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titre: Parameter-free/Pareto-driven procedural 3D reconstruction of buildings from ground-level sequences
auteur: Loïc Simon, Olivier Teboul, Panagiotis Koutsourakis, Luc van Gool, Nikos Paragios
article: 25th IEEE Conference on Computer Vision and Pattern Recognition - CVPR 2012, Jun 2012, Rhode Island, United States. pp.518-525, ⟨10.1109/CVPR.2012.6247716⟩
DOI: DOI : 10.1109/CVPR.2012.6247716
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titre: Unsupervised co-segmentation through region matching
auteur: Jose Rubio, Joan Serrat, Antonio López, Nikos Paragios
article: 25th IEEE Conference on Computer Vision and Pattern Recognition - CVPR 2012, Jun 2012, Rhode Island, United States. pp.749-756
Accès au bibtex

titre: Graph-based Detection, Segmentation & Characterization of Brain Tumors
auteur: Sarah Parisot, Hugues Duffau, Stéphane Chemouny, Nikos Paragios
article: CVPR - 25th IEEE Conference on Computer Vision and Pattern Recognition 2012, Jun 2012, Providence, United States
Accès au texte intégral et bibtex

titre: Automatic skeletal muscle segmentation through random walks and graph-based seed placement
auteur: Pierre-Yves Baudin, Noura Azzabou, Pierre G. Carlier, Nikos Paragios
article: International Symposium Biomedical Imaging (ISBI), May 2012, Barcelone, Spain. pp.1036--1039, ⟨10.1109/isbi.2012.6235735⟩
DOI: DOI : 10.1109/isbi.2012.6235735
Accès au texte intégral et bibtex

titre: Manifold-constrained embeddings for the detection of white matter lesions in brain MRI
auteur: Samuel Kadoury, Guray Erus, Evangelina I. Zacharaki, Nikos Paragios, Davatzikos Christos
article: 2012 IEEE 9th International Symposium on Biomedical Imaging - ISBI 2012, May 2012, Barcelona, Spain. pp.562 - 565
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titre: Graph-based guide-wire segmentation through fusion of contrast-enhanced and fluoroscopic images
auteur: Nicolas Honnorat, Régis Vaillant, Nikos Paragios
article: 2012 IEEE 9th International Symposium on Biomedical Imaging - ISBI 2012, May 2012, Barcelona, Spain. pp.948 - 951
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titre: Compressed sensing subtracted rotational angiography with multiple sparse penalty
auteur: Hélène Langet, C. Riddell, Y. Trousset, Arthur Tenenhaus, Elisabeth Lahalle, Gilles Fleury, Nikos Paragios
article: 2012 9th IEEE International Symposium on Biomedical Imaging (ISBI 2012) , May 2012, Barcelone, Spain. pp.884-887, ⟨10.1109/ISBI.2012.6235690⟩
DOI: DOI : 10.1109/ISBI.2012.6235690
Accès au texte intégral et bibtex

titre: Manifold-enhanced Segmentation through Random Walks on Linear Subspace Priors
auteur: Pierre-Yves Baudin, Noura Azzabou, Pierre G. Carlier, Nikos Paragios
article: British Machine Vision Conference, 2012, United Kingdom. pp.51.1-51.10
Accès au texte intégral et bibtex

titre: Prior Knowledge, Random Walks and Human Skeletal Muscle Segmentation
auteur: Pierre-Yves Baudin, Noura Azzabou, Pierre G. Carlier, Nikos Paragios
article: Medical Image Computing and Computer-Assisted Intervention (MICCAI), 2012, France. pp.569-576
Accès au texte intégral et bibtex

titre: Discrete symmetric image registration
auteur: Aristeidis Sotiras, Nikos Paragios
article: Biomedical Imaging (ISBI), 2012 9th IEEE International Symposium on, 2012, Spain. pp.342-345
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Reports

titre: Markov Random Fields in Vision Perception: A Survey
auteur: Chaohui Wang, Nikos Paragios
article: [Research Report] RR-7945, INRIA. 2012
Accès au texte intégral et bibtex

titre: Deformable Medical Image Registration: A Survey
auteur: Aristeidis Sotiras, Christos Davatzikos, Nikos Paragios
article: [Research Report] RR-7919, INRIA. 2012
Accès au texte intégral et bibtex

2011

Journal articles

titre: Special issue on Optimization for vision, graphics and medical imaging: Theory and applications
auteur: Nikos Komodakis, Georg Langs, Horst Bischof, Nikos Paragios
article: Computer Vision and Image Understanding, 2011, 115 (12), pp.1597. ⟨10.1016/j.cviu.2011.10.005⟩
DOI: DOI : 10.1016/j.cviu.2011.10.005
Accès au bibtex

titre: Model-Based 3D Hand Pose Estimation from Monocular Video
auteur: Martin de La Gorce, J. Fleet D, Nikos Paragios
article: IEEE Transactions on Pattern Analysis and Machine Intelligence, 2011, 33 (9), pp.1793 - 1805. ⟨10.1109/TPAMI.2011.33⟩
DOI: DOI : 10.1109/TPAMI.2011.33
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titre: Automatic inference of articulated spine models in CT images using high-order Markov Random Fields
auteur: Samuel Kadoury, Hubert Labelle, Nikos Paragios
article: Medical Image Analysis, 2011, 15 (4), pp.426-437. ⟨10.1016/j.media.2011.01.006⟩
DOI: DOI : 10.1016/j.media.2011.01.006
Accès au bibtex

titre: DRAMMS: Deformable registration via attribute matching and mutual-saliency weighting.
auteur: Yangming Ou, Aristeidis Sotiras, Nikos Paragios, Christos Davatzikos
article: Medical Image Analysis, 2011, 15 (4), pp.622-639. ⟨10.1016/j.media.2010.07.002⟩
DOI: DOI : 10.1016/j.media.2010.07.002
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titre: Learning deformation and structure simultaneously: in situ endograft deformation analysis.
auteur: Georg Langs, Nikos Paragios, Pascal Desgranges, Alain Rahmouni, Hicham Kobeiter
article: Medical Image Analysis, 2011, 15 (1), pp.12-21. ⟨10.1016/j.media.2010.06.005⟩
DOI: DOI : 10.1016/j.media.2010.06.005
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titre: MRF Energy Minimization and Beyond via Dual Decomposition
auteur: Nikos Komodakis, Nikos Paragios, Georgios Tziritas
article: IEEE Transactions on Pattern Analysis and Machine Intelligence, 2011, 33 (3), pp.531-552
Accès au bibtex

titre: Deformable Medical Image Registration: Setting the State of the Art with Discrete Methods
auteur: Ben Glocker, Aristeidis Sotiras, Nikos Komodakis, Nikos Paragios
article: Annual Review of Biomedical Engineering, 2011, 13, pp.219-244
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titre: Random Exploration of the Procedural Space for Single-View 3D Modeling of Buildings
auteur: Loïc Simon, O. Teboul, Koutsourakis Panagiotis, Nikos Paragios
article: International Journal of Computer Vision, 2011, 93 (2), pp.253-271. ⟨10.1007/s11263-010-0370-6⟩
DOI: DOI : 10.1007/s11263-010-0370-6
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Conference papers

titre: Viewpoint invariant 3D landmark model inference from monocular 2D images using higher-order priors
auteur: Chaohui Wang, Yun Zeng, Loïc Simon, Ioannis A. Kakadiaris, Dimitris Samaras, Nikos Paragios
article: 13th International Conference on Computer Vision - ICCV 2011, Nov 2011, Barcelona, Spain. pp.319-326, ⟨10.1109/ICCV.2011.6126258⟩
DOI: DOI : 10.1109/ICCV.2011.6126258
Accès au bibtex

titre: Markov Random Field-based fitting of a subdivision-based geometric atlas
auteur: Uday Kurkure, Yen Le, Nikos Paragios, Tao Ju, James Carson, Ioannis A. Kakadiaris
article: 13th International Conference on Computer Vision - ICCV 2011, Nov 2011, Barcelona, Spain. pp.2540-2547, ⟨10.1109/ICCV.2011.6126541⟩
DOI: DOI : 10.1109/ICCV.2011.6126541
Accès au bibtex

titre: Efficient parallel message computation for MAP inference
auteur: Stavros Alchatzidis, Aristeidis Sotiras, Nikos Paragios
article: International Conference on Computer Vision, Nov 2011, Barcelone, Spain. pp.1379 - 1386
Accès au texte intégral et bibtex

titre: Graph Based Spatial Position Mapping of Low-grade Gliomas
auteur: Sarah Parisot, Hugues Duffau, Stéphane Chemouny, Nikos Paragios
article: MICCAI - 14th International Conference on Medical Image Computing and Computer-Assisted Intervention - 2011, Sep 2011, Toronto, Canada. pp.508-515, ⟨10.1007/978-3-642-23629-7_62⟩
DOI: DOI : 10.1007/978-3-642-23629-7_62
Accès au texte intégral et bibtex

titre: Pose-Invariant 3D Proximal Femur Estimation through Bi-planar Image Segmentation with Hierarchical Higher-Order Graph-Based Priors
auteur: Chaohui Wang, Haithem Boussaid, Loïc Simon, Jean-Yves Lazennec, Nikos Paragios
article: 14th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2011, Sep 2011, Toronto, Canada. pp.346-353, ⟨10.1007/978-3-642-23626-6_43⟩
DOI: DOI : 10.1007/978-3-642-23626-6_43
Accès au bibtex

titre: Graph-Based Geometric-Iconic Guide-Wire Tracking
auteur: Nicolas Honnorat, Régis Vaillant, Nikos Paragios
article: 14th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2011, Sep 2011, Toronto, Canada. pp.9-16, ⟨10.1007/978-3-642-23623-5_2⟩
DOI: DOI : 10.1007/978-3-642-23623-5_2
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titre: 3D Model-based Reconstruction of the Proximal Femur from Low-dose Biplanar X-Ray Images
auteur: Haithem Boussaid, Samuel Kadoury, Iasonas Kokkinos, Jean-Yves Lazennec, Guoyan Zheng, Nikos Paragios
article: The 22nd British Machine Vision Conference - BMVC 2011, Aug 2011, Dundee, United Kingdom. pp.1-10, ⟨10.5244/C.25.35⟩
DOI: DOI : 10.5244/C.25.35
Accès au texte intégral et bibtex

titre: Shape grammar parsing via Reinforcement Learning
auteur: Olivier Teboul, Iasonas Kokkinos, Loïc Simon, Panagiotis Koutsourakis, Nikos Paragios
article: 24th IEEE Conference on Computer Vision and Pattern Recognition - CVPR 2011, Jun 2011, Colorado Springs, United States. pp.2273-2280, ⟨10.1109/CVPR.2011.5995319⟩
DOI: DOI : 10.1109/CVPR.2011.5995319
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titre: Intrinsic dense 3D surface tracking
auteur: Yun Zeng, Chaohui Wang, Yang Wang, Xianfeng Gu, Dimitris Samaras, Nikos Paragios
article: 24th IEEE Conference on Computer Vision and Pattern Recognition - CVPR 2011, Jun 2011, Colorado Springs, United States. pp.1225-1232, ⟨10.1109/CVPR.2011.5995513⟩
DOI: DOI : 10.1109/CVPR.2011.5995513
Accès au bibtex

titre: Illumination estimation and cast shadow detection through a higher-order graphical model
auteur: A. Panagopoulos, Chaohui Wang, Dimitris Samaras, Nikos Paragios
article: 2011 IEEE Conference on Computer Vision and Pattern Recognition - CVPR 2011, Jun 2011, Colorado Springs, United States. pp.673 - 680, ⟨10.1109/CVPR.2011.5995585⟩
DOI: DOI : 10.1109/CVPR.2011.5995585
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titre: Landmark/image-based deformable registration of gene expression data
auteur: Uday Kurkure, Yen H. Le, Nikos Paragios, James Carson, Tao Ju, Ioannis A. Kakadiaris
article: 24th IEEE Conference on Computer Vision and Pattern Recognition - CVPR 2011, Jun 2011, Rhode Island, United States. pp.1089-1096, ⟨10.1109/CVPR.2011.5995708⟩
DOI: DOI : 10.1109/CVPR.2011.5995708
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titre: Optimal similarity registration of volumetric images
auteur: Effrosini Kokiopoulou, Daniel Kressner, Michail Zervos, Nikos Paragios
article: 24th IEEE Conference on Computer Vision and Pattern Recognition - CVPR 2011, Jun 2011, Colorado Springs, United States. pp.2449-2456, ⟨10.1109/CVPR.2011.5995337⟩
DOI: DOI : 10.1109/CVPR.2011.5995337
Accès au bibtex

titre: Boosted metric learning for 3D multi-modal deformable registration
auteur: Fabrice Michel, Michael Bronstein, Alexander Bronstein, Nikos Paragios
article: 2011 IEEE 8th International Symposium on Biomedical Imaging - ISBI 2011, Mar 2011, Chicago, United States. pp.1209-1214, ⟨10.1109/ISBI.2011.5872619⟩
DOI: DOI : 10.1109/ISBI.2011.5872619
Accès au bibtex

titre: Tagged cardiac MR image segmentation using boundary & regional-support and graph-based deformable priors
auteur: Bo Xiang, Chaohui Wang, Jean-François Deux, Alain Rahmouni, Nikos Paragios
article: 2011 IEEE 8th International Symposium on Biomedical Imaging - ISBI 2011, Mar 2011, Chicago, United States. pp.1706-1711, ⟨10.1109/ISBI.2011.5872733⟩
DOI: DOI : 10.1109/ISBI.2011.5872733
Accès au bibtex

titre: Landmark-based segmentation of lungs while handling partial correspondences using sparse graph-based priors
auteur: Ahmed Besbes, Nikos Paragios
article: 2011 IEEE 8th International Symposium on Biomedical Imaging - ISBI 2011, Mar 2011, Chicago, United States. pp.989-995, ⟨10.1109/ISBI.2011.5872568⟩
DOI: DOI : 10.1109/ISBI.2011.5872568
Accès au bibtex

titre: Curvilinear structures extraction in cluttered bioimaging data with discrete optimization methods
auteur: Nicolas Honnorat, Régis Vaillant, James Duncan, Nikos Paragios
article: 2011 IEEE 8th International Symposium on Biomedical Imaging - ISBI 2011, Mar 2011, Chicago, United States. pp.1353-1357, ⟨10.1109/ISBI.2011.5872651⟩
DOI: DOI : 10.1109/ISBI.2011.5872651
Accès au bibtex

Books

titre: Computer Vision and Image Understanding, Special issue on Optimization for vision, graphics and medical imaging: Theory and applications
auteur: Nikos Komodakis, Georg Langs, Horst Bischof, Nikos Paragios
article: Elsevier, pp.1597, 2011
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Reports

titre: Discrete Methods for Guide-wire Segmentation and Tracking
auteur: Nicolas Honnorat, Régis Vaillant, Nikos Paragios
article: [Research Report] RR-7718, INRIA. 2011
Accès au texte intégral et bibtex

2010

Journal articles

titre: Spatio-temporal speckle reduction in ultrasound sequences
auteur: Noura Azzabou, Nikos Paragios
article: Inverse Problems and Imaging , 2010, 4 (2), pp.211-222. ⟨10.3934/ipi.2010.4.211⟩
DOI: DOI : 10.3934/ipi.2010.4.211
Accès au bibtex

titre: Large-Scale Building Reconstruction Through Information Fusion and 3-D Priors
auteur: Konstantinos Karantzalos, Nikos Paragios
article: IEEE Transactions on Geoscience and Remote Sensing, 2010, 48 (5), pp.2283-2296. ⟨10.1109/TGRS.2009.2039220⟩
DOI: DOI : 10.1109/TGRS.2009.2039220
Accès au bibtex

titre: Linear intensity-based image registration by Markov random fields and discrete optimization
auteur: Darko Zikic, Ben Glocker, Oliver Kutter, Martin Groher, Nikos Komodakis, Ali Kamen, Nikos Paragios, Nassir Navab
article: Medical Image Analysis, 2010, 14 (4), pp.550-562. ⟨10.1016/j.media.2010.04.003⟩
DOI: DOI : 10.1016/j.media.2010.04.003
Accès au bibtex

titre: A variational approach to monocular hand-pose estimation
auteur: Martin de La Gorce, Nikos Paragios
article: Computer Vision and Image Understanding, 2010, pp.363-372
Accès au bibtex

titre: Image Reconstruction Using Particle Filters and Multiple Hypotheses Testing
auteur: Noura Azzabou, Nikos Paragios, Frédéric Guichard
article: IEEE Transactions on Image Processing, 2010, pp.1181-1190
Accès au bibtex

Conference papers

titre: Simultaneous Geometric - Iconic Registration
auteur: Aristeidis Sotiras, Yangming Ou, Ben Glocker, Christos Davatzikos, Nikos Paragios
article: 13th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2010, Sep 2010, Beijing, China. pp.676-683, ⟨10.1007/978-3-642-15745-5_83⟩
DOI: DOI : 10.1007/978-3-642-15745-5_83
Accès au bibtex

titre: Guide-Wire Extraction through Perceptual Organization of Local Segments in Fluoroscopic Images
auteur: Nicolas Honnorat, Régis Vaillant, Nikos Paragios
article: 13th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2010, Sep 2010, Beijing, China. pp.440-448, ⟨10.1007/978-3-642-15711-0_55⟩
DOI: DOI : 10.1007/978-3-642-15711-0_55
Accès au bibtex

titre: 3D Knowledge-Based Segmentation Using Pose-Invariant Higher-Order Graphs
auteur: Chaohui Wang, Olivier Teboul, Fabrice Michel, Salma Essafi, Nikos Paragios
article: MICCAI 2010 - 13th International Conference on Medical Image Computing and Computer Assisted Intervention, Sep 2010, Beijing, China. pp.189-196, ⟨10.1007/978-3-642-15711-0_24⟩
DOI: DOI : 10.1007/978-3-642-15711-0_24
Accès au bibtex

titre: Model-Based Multi-view Fusion of Cinematic Flow and Optical Imaging
auteur: Mickaël Savinaud, Martin de La Gorce, S. Maitrejean, Nikos Paragios
article: 13th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2010, Sep 2010, Beijing, China. pp.668-675, ⟨10.1007/978-3-642-15745-5_82⟩
DOI: DOI : 10.1007/978-3-642-15745-5_82
Accès au bibtex

titre: Nonlinear Embedding towards Articulated Spine Shape Inference Using Higher-Order MRFs
auteur: Samuel Kadoury, Nikos Paragios
article: 13th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2010, Sep 2010, Beijing, China. pp.579-586, ⟨10.1007/978-3-642-15711-0_72⟩
DOI: DOI : 10.1007/978-3-642-15711-0_72
Accès au bibtex

titre: Estimating Shadows with the Bright Channel Cue
auteur: Alexandros Panagoupolos, Chaohui Wang, Dimitris Samaras, Nikos Paragios
article: 11th European Conference on Computer Vision - ECCV 2010, Sep 2010, Heraklion, Greece. pp.1-12, ⟨10.1007/978-3-642-35740-4_1⟩
DOI: DOI : 10.1007/978-3-642-35740-4_1
Accès au bibtex

titre: Dense non-rigid surface registration using high-order graph matching
auteur: Yun Zeng, Chaohui Wang, Yang Wang, Xianfeng Gu, Dimitris Samaras, Nikos Paragios
article: 23rd IEEE Conference on Computer Vision and Pattern Recognition - CVPR 2010, Jun 2010, San Francisco, United States. pp.382-389, ⟨10.1109/CVPR.2010.5540189⟩
DOI: DOI : 10.1109/CVPR.2010.5540189
Accès au bibtex

titre: Segmentation of building facades using procedural shape priors
auteur: Olivier Teboul, Loïc Simon, Panagiotis Koutsorakis, Nikos Paragios
article: 23rd IEEE Conference on Computer Vision and Pattern Recognition - CVPR 2010, Jun 2010, San Francisco, United States. pp.3105-3112, ⟨10.1109/CVPR.2010.5540068⟩
DOI: DOI : 10.1109/CVPR.2010.5540068
Accès au bibtex

titre: Data fusion through cross-modality metric learning using similarity-sensitive hashing
auteur: Michael Bronstein, Alexander Bronstein, Fabrice Michel, Nikos Paragios
article: 23rd IEEE Conference on Computer Vision and Pattern Recognition - CVPR 2010, Jun 2010, San Francisco, United States. pp.3594-3601, ⟨10.1109/CVPR.2010.5539928⟩
DOI: DOI : 10.1109/CVPR.2010.5539928
Accès au bibtex

titre: Needle tracking through higher-order MRF optimization
auteur: Tim Hauke Heibel, Ben Glocker, Nikos Paragios, Nassir Navab
article: 2010 IEEE 7th International Symposium on Biomedical Imaging - ISBI 2010, Apr 2010, Rotterdam, Netherlands. pp.624-627, ⟨10.1109/ISBI.2010.5490099⟩
DOI: DOI : 10.1109/ISBI.2010.5490099
Accès au bibtex

titre: Image transport regression using mixture of experts and discrete Markov random fields
auteur: Fabrice Michel, Nikos Paragios
article: 2010 IEEE 7th International Symposium on Biomedical Imaging - ISBI 2010, Apr 2010, Rotterdam, Netherlands. pp.1229-1232, ⟨10.1109/ISBI.2010.5490217⟩
DOI: DOI : 10.1109/ISBI.2010.5490217
Accès au bibtex

titre: Multimodal inference of articulated spine models from higher order energy functions of discrete MRFS
auteur: Samuel Kadoury, Nikos Paragios
article: 2010 IEEE 7th International Symposium on Biomedical Imaging - ISBI 2010, Apr 2010, Rotterdam, Netherlands. pp.1393-1396, ⟨10.1109/ISBI.2010.5490258⟩
DOI: DOI : 10.1109/ISBI.2010.5490258
Accès au bibtex

titre: Bioluminescence enhancement through fusion of optical imaging and cinematic video flow
auteur: Mickaël Savinaud, Aristeidis Sotiras, S. Maitrejean, Nikos Paragios
article: 2010 IEEE 7th International Symposium on Biomedical Imaging - ISBI 2010, Apr 2010, Rotterdam, Netherlands. pp.688-691, ⟨10.1109/ISBI.2010.5490081⟩
DOI: DOI : 10.1109/ISBI.2010.5490081
Accès au bibtex

titre: Robust guidewire segmentation through boosting, clustering and linear programming
auteur: Nicolas Honnorat, Régis Vaillant, Nikos Paragios
article: 2010 IEEE 7th International Symposium on Biomedical Imaging - ISBI 2010, Apr 2010, Rotterdam, Netherlands. pp.924-927, ⟨10.1109/ISBI.2010.5490138⟩
DOI: DOI : 10.1109/ISBI.2010.5490138
Accès au bibtex

titre: Detecting mutually-salient landmark pairs with MRF regularization
auteur: Yangming Ou, Ahmed Besbes, Michel Billelo, M. Mansour, Christos Davatzikos, Nikos Paragios
article: 2010 IEEE 7th International Symposium on Biomedical Imaging - ISBI 2010, Apr 2010, Rotterdam, Netherlands. pp.400-403, ⟨10.1109/ISBI.2010.5490324⟩
DOI: DOI : 10.1109/ISBI.2010.5490324
Accès au bibtex

titre: Markov Random Field Optimization for Intensity-based 2D-3D Registration
auteur: Darko Zikic, Ben Glocker, Oliver Kutter, Martin Groher, Nikos Komodakis, Ali Khamene, Nikos Paragios, Nassir Navab
article: SPIE 2010, Medical Imaging 2010: Image Processing, 2010, San Diego, United States. ⟨10.1117/12.837232⟩
DOI: DOI : 10.1117/12.837232
Accès au bibtex

titre: Non-rigid Registration using Discrete MRFs: Application to Thoracic CT Images
auteur: Ben Glocker, Nikos Komodakis, Nikos Paragios, Nassir Navab
article: Workshop Evaluation of Methods for Pulmonary Image Registration, MICCAI 2010, 2010, China
Accès au bibtex

Books

titre: ECCV 2010, 11th European Conference on Computer Vision, Heraklion, Crete, Greece, September 5-11, 2010 (Part 1)
auteur: Kostas Daniilidis, Petros Maragos, Nikos Paragios
article: Springer, pp.8111, 2010, 978-3-642-15548-2
Accès au bibtex

titre: Inverse Problem and Imaging Journal Special Issue on Medical Image Analysis
auteur: Tony Chan, Yunmei Chen, Nikos Paragios
article: American Institute of Mathematical Sciences, pp.125, 2010
Accès au bibtex

2009

Journal articles

titre: Registration with Uncertainties and Statistical Modeling of Shapes with Variable Metric Kernels
auteur: Maxime Taron, Nikos Paragios, Marie-Pierre Jolly
article: IEEE Transactions on Pattern Analysis and Machine Intelligence, 2009, 31 (1), pp.99-113. ⟨10.1109/TPAMI.2008.36⟩
DOI: DOI : 10.1109/TPAMI.2008.36
Accès au bibtex

Reports

titre: Cue Integration and Discrete MRFs towards Knowledge-based Segmentation and Tracking
auteur: Ahmed Besbes, Nikos Paragios, Nikos Komodakis
article: [Research Report] RR-6831, INRIA. 2009, pp.24
Accès au texte intégral et bibtex

2008

Journal articles

titre: Discrete optimization in computer vision
auteur: Nikos Paragios, Zabih Ramin
article: Computer Vision and Image Understanding, 2008, pp.1,2
Accès au bibtex

titre: Dense image registration through MRFs and efficient linear programming
auteur: Glocker Ben, Nikos Komodakis, Georgios Tziritas, Nassir Navab, Nikos Paragios
article: Medical Image Analysis, 2008, pp.731-741
Accès au bibtex

titre: Prior Knowledge, Level Set Representations & Visual Grouping
auteur: Mikaël Rousson, Nikos Paragios
article: International Journal of Computer Vision, 2008, 76 (3), pp.231-243. ⟨10.1007/s11263-007-0054-z⟩
DOI: DOI : 10.1007/s11263-007-0054-z
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titre: Performance vs computational efficiency for optimizing single and dynamic MRFs: Setting the state of the art with primal-dual strategies
auteur: Nikos Komodakis, Georgios Tziritas, Nikos Paragios
article: Computer Vision and Image Understanding, 2008, pp.14-29
Accès au bibtex

Conference papers

titre: Spatio-temporal speckle reduction in ultrasound sequences
auteur: Noura Azzabou, Nikos Paragios
article: 11th International Conference on Medical Image Computing and Computer-Assisted Intervention - MICCAI 2008, Sep 2008, New-York, United States. pp.951-958, ⟨10.1007/978-3-540-85988-8_113⟩
DOI: DOI : 10.1007/978-3-540-85988-8_113
Accès au bibtex

titre: Graph commute times for image representation
auteur: Régis Behmo, Nikos Paragios, Veronique Prinet
article: CVPR 2008 - Computer Vision and Pattern Recognition, Jun 2008, Anchorage, AK, United States. pp.1-8, ⟨10.1109/CVPR.2008.4587840⟩
DOI: DOI : 10.1109/CVPR.2008.4587840
Accès au bibtex

titre: Automatic detection of liver tumors
auteur: Pescia Daniel, Nikos Paragios, Stéphane Chemouny
article: 2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, May 2008, Paris, France. pp.672-675, ⟨10.1109/ISBI.2008.4541085⟩
DOI: DOI : 10.1109/ISBI.2008.4541085
Accès au bibtex

titre: Knee reconstruction through efficient linear programming
auteur: Mihai Sardarescu, Nikos Paragios, Nikos Komodakis, R. Raymond, P. Hernigou, Alain Rahmouni
article: 2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, May 2008, Paris, France. pp.664 - 667, ⟨10.1109/ISBI.2008.4541083⟩
DOI: DOI : 10.1109/ISBI.2008.4541083
Accès au bibtex

titre: Group-wise MDL based registration of small animals in video sequences
auteur: Han Yuan, Georg Langs, Nikos Paragios
article: 2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2008, Paris, France. pp.1179 - 1182
Accès au bibtex

titre: Task-Specific Functional Brain Geometry from Model Maps
auteur: Georg Langs, Dimitris Samaras, Nikos Paragios, Jean Honorio, Nelly Alia-Klein, Dardo Tomasi, Volkowu Nora D., Rita Goldstein
article: MICCAI, 2008, New-York, United States. pp.925-933, ⟨10.1007/978-3-540-85988-8_110⟩
DOI: DOI : 10.1007/978-3-540-85988-8_110
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titre: Deformable Mosaicing for Whole-Body MRI
auteur: Christian Wachinger, Glocker Ben, Jean-Claude Zeltner, Nikos Paragios, Nikos Komodakis, Michael Sass Hansen, Nassir Navab
article: Medical Image Computing and Computer-Assisted Intervention - MICCAI 2008, 2008, New-York, United States. pp.113-121, ⟨10.1007/978-3-540-85990-1_14⟩
DOI: DOI : 10.1007/978-3-540-85990-1_14
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titre: Optical flow estimation with uncertainties through dynamic MRFs
auteur: Glocker Ben, Nikos Paragios, Nikos Komodakis, Georgios Tziritas, Nassir Navab
article: Optical flow estimation with uncertainties through dynamic MRFs, 2008, United States. pp.1-8
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titre: Spatiotemporal Decomposition in Object-Space along Reconstruction in Emission Tomography
auteur: Xavier Hubert, Dominique Chambellan, Samuel Legoupil, Régine Trébossen, Jean-Robert Deverre, Nikos Paragios
article: Medical Image Computing and Computer-Assisted Intervention - MICCAI 2008, 2008, New-York, United States. pp.255-262, ⟨10.1007/978-3-540-85990-1_31⟩
DOI: DOI : 10.1007/978-3-540-85990-1_31
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titre: Conjoint use of coded-aperture collimators and MLEM algorithm: Towards large blood vessels reconstruction at 511 KEV
auteur: Xavier Hubert, Dominique Chambellan, Samuel Legoupil, Jean-Robert Deverre, Nikos Paragios
article: 2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2008, Paris, France. pp.1461 - 1464, ⟨10.1109/ISBI.2008.4541283⟩
DOI: DOI : 10.1109/ISBI.2008.4541283
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titre: Beyond Loose LP-Relaxations: Optimizing MRFs by Repairing Cycles
auteur: Nikos Komodakis, Nikos Paragios
article: ECCV, 2008, France. pp.806-820
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titre: Fleet: Model-based hand tracking with texture, shading and self-occlusions
auteur: Martin de La Gorce, Nikos Paragios, J. Fleet D
article: CVPR, 2008, United States. pp.1-8
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titre: Modeling the structure of multivariate manifolds: Shape maps
auteur: Georg Langs, Nikos Paragios
article: CVPR, 2008, United States. pp.1-8
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titre: An Application of Graph Commute Times to Image Indexing
auteur: Régis Behmo, Nikos Paragios, Veronique Prinet
article: Geoscience and Remote Sensing Symposium, 2008. IGARSS 2008. IEEE International, 2008, Boston, United States. pp.495-498, ⟨10.1109/IGARSS.2008.4779392⟩
DOI: DOI : 10.1109/IGARSS.2008.4779392
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titre: Effiziente nichtlineare Registrierung mittels diskreter Optimierung.
auteur: Ben Glocker, Nikos Komodakis, Nikos Paragios, Georgios Tziritas, Nassir Navab
article: Bildverarbeitung für die Medizin 2008, 2008, Germany. pp.87-91
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titre: Sparsity, redundancy and optimal image support towards knowledge-based segmentation.
auteur: Salma Essafi, Georg Langs, Nikos Paragios
article: CVPR 2008, 2008, United States. pp.1-7
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2006

Conference papers

titre: Extraction de couches de même mouvement via des techniques combinatoires
auteur: Romain Dupont, Nikos Paragios, Renaud Keriven, Philippe Fuchs
article: Reconnaissance des Formes et Intelligence Artificielle (RFIA), Jun 2006, Tours, France. pp.P
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2005

Conference papers

titre: Extraction of layers of similar motion through combinatorial techniques
auteur: Romain Dupont, Nikos Paragios, Renaud Keriven, Philippe Fuchs
article: International Workshop On Energy Minimization Methods, Nov 2005, St. Augustine, United States. pp 220-234, ⟨10.1007/11585978_15⟩
DOI: DOI : 10.1007/11585978_15
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