Publications HAL du labo/EPI opis;galen;galen-post;cvn

Journal articles

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Samy Ammari, Raoul Sallé de Chou, Tarek Assi, Mehdi Touat, Emilie Chouzenoux, et al.. Machine-Learning-Based Radiomics MRI Model for Survival Prediction of Recurrent Glioblastomas Treated with Bevacizumab. Diagnostics, MDPI, 2021, 11 (7), pp.1263. ⟨10.3390/diagnostics11071263⟩. ⟨hal-03292019⟩
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https://hal.sorbonne-universite.fr/hal-03292019/file/diagnostics-11-01263-v2.pdf BibTex
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Samy Ammari, Stéphanie Pitre-Champagnat, Laurent Dercle, Emilie Chouzenoux, Salma Moalla, et al.. Influence of Magnetic Field Strength on Magnetic Resonance Imaging Radiomics Features in Brain Imaging, an In Vitro and In Vivo Study. Frontiers in Oncology, Frontiers, 2021, ⟨10.3389/fonc.2020.541663⟩. ⟨hal-03117688⟩
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https://hal.archives-ouvertes.fr/hal-03117688/file/fonc-10-541663.pdf BibTex
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Daniel Antunes, Jacques-Olivier Lachaud, Hugues Talbot. An Elastica-driven Digital Curve Evolution Model for Image Segmentation. Journal of Mathematical Imaging and Vision, Springer Verlag, 2021, 63 (1), pp.1-17. ⟨10.1007/s10851-020-00983-4⟩. ⟨hal-03144926⟩
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https://hal.archives-ouvertes.fr/hal-03144926/file/Antunes_etal_Digital_Elastica.pdf BibTex
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Guillaume Chassagnon, Maria Vakalopoulou, Alexis Régent, Mihir Sahasrabudhe, Rafael Marini, et al.. Elastic Registration–driven Deep Learning for Longitudinal Assessment of Systemic Sclerosis Interstitial Lung Disease at CT. Radiology, Radiological Society of North America, 2021, 298 (1), pp.189-198. ⟨10.1148/radiol.2020200319⟩. ⟨hal-03134510⟩
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Guillaume Chassagnon, Maria Vakalopoulou, Enzo Battistella, Stergios Christodoulidis, Trieu-Nghi Hoang-Thi, et al.. AI-driven quantification, staging and outcome prediction of COVID-19 pneumonia. Medical Image Analysis, Elsevier, 2021, 67, pp.101860. ⟨10.1016/j.media.2020.101860⟩. ⟨hal-03133234⟩
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Emilie Chouzenoux, Jean-Christophe Pesquet, Cyril Riddell, Marion Savanier, Yves Trousset. Convergence of Proximal Gradient Algorithm in the Presence of Adjoint Mismatch. Inverse Problems, IOP Publishing, In press. ⟨hal-03136110⟩
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https://hal.archives-ouvertes.fr/hal-03136110/file/8055_OO.pdf BibTex
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Thomas Hortholary, Claire Carrion, Emilie Chouzenoux, Jean-Christophe Pesquet, Claire Lefort. Multiplex‐multiphoton microscopy and computational strategy for biomedical imaging. Microscopy Research and Technique, Wiley, In press, ⟨10.1002/jemt.23712⟩. ⟨hal-03126396⟩
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https://hal.archives-ouvertes.fr/hal-03126396/file/MRT-20-196.R2_Proof_hi_21%2012%202020.pdf BibTex
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Yunshi Huang, Emilie Chouzenoux, Víctor Elvira. Probabilistic modeling and inference for sequential space-varying blur identification. IEEE Transactions on Computational Imaging, IEEE, In press. ⟨hal-03225842⟩
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https://hal.archives-ouvertes.fr/hal-03225842/file/journal_paper_Final.pdf BibTex
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Nathalie Lassau, Samy Ammari, Emilie Chouzenoux, Hugo Gortais, Paul Herent, et al.. Integrating deep learning CT-scan model, biological and clinical variables to predict severity of COVID-19 patients. Nature Communications, Nature Publishing Group, In press, 12 (634), ⟨10.1038/s41467-020-20657-4⟩. ⟨hal-03136018⟩
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https://hal.archives-ouvertes.fr/hal-03136018/file/s41467-020-20657-4.pdf BibTex
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Claire Lefort, Mathieu Chalvidal, Alexis Parenté, Véronique Blanquet, Henri Massias, et al.. FAMOUS: a fast instrumental and computational pipeline for multiphoton microscopy applied to 3D imaging of muscle ultrastructure. Journal of Physics D: Applied Physics, IOP Publishing, 2021, 54 (27), pp.274005. ⟨10.1088/1361-6463/abf8f2⟩. ⟨hal-03225997⟩
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https://hal.archives-ouvertes.fr/hal-03225997/file/JPhysD-126807.R1_Proof_hi.pdf BibTex
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Yingping Li, Samy Ammari, Corinne Balleyguier, Nathalie Lassau, Emilie Chouzenoux. Impact of Preprocessing and Harmonization Methods on the Removal of Scanner Effects in Brain MRI Radiomic Features. Cancers, MDPI, 2021, 13, ⟨10.3390/cancers13123000⟩. ⟨hal-03261617⟩
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https://hal.archives-ouvertes.fr/hal-03261617/file/cancers-13-03000.pdf BibTex
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Arthur Marmin, Marc Castella, Jean-Christophe Pesquet, Laurent Duval. Sparse signal reconstruction for nonlinear models via piecewise rational optimization. Signal Processing, Elsevier, 2021, 179, pp.107835:1-107835:13. ⟨10.1016/j.sigpro.2020.107835⟩. ⟨hal-02972442v2⟩
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https://hal.archives-ouvertes.fr/hal-02972442/file/main.pdf BibTex
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Lazaros Papamanolis, Hyun Kim, Clara Jaquet, Matthew Sinclair, Michiel Schaap, et al.. Myocardial Perfusion Simulation for Coronary Artery Disease: A Coupled Patient-Specific Multiscale Model. Annals of Biomedical Engineering, Springer Verlag, 2021, 49, pp.1432-1447. ⟨10.1007/s10439-020-02681-z⟩. ⟨hal-03036457v2⟩
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https://hal.archives-ouvertes.fr/hal-03036457/file/Papamanolis2020_Article_MyocardialPerfusionSimulationF.pdf BibTex
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Julie Robic, Alex Nkengne, Benjamin Perret, Michel Couprie, Hugues Talbot, et al.. Clinical validation of a computer‐based approach for the quantification of the skin ageing process of women using in vivo confocal microscopy. Journal of the European Academy of Dermatology and Venereology, Wiley, 2021, 35 (1), ⟨10.1111/jdv.16810⟩. ⟨hal-03144931⟩
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https://hal.archives-ouvertes.fr/hal-03144931/file/Letter_RCM_Draft.pdf BibTex
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Tirza Routtenberg, Alberto Carini, Emilie Chouzenoux, Piya Pal, José C. M. Bermudez, et al.. Fight the Pandemic: Highlights From the 2020 IEEE 5-Minute Video Clip Contest. IEEE Signal Processing Magazine, Institute of Electrical and Electronics Engineers, 2021, 38, 2, pp.138-143. ⟨10.1109/MSP.2020.3046230⟩. ⟨hal-03161830⟩
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https://hal.archives-ouvertes.fr/hal-03161830/file/mainSPMAG.pdf BibTex
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Shalini Sharma, Víctor Elvira, Emilie Chouzenoux, Angshul Majumdar. Recurrent Dictionary Learning for State-Space Models with an Application in Stock Forecasting. Neurocomputing, Elsevier, In press. ⟨hal-03184841⟩
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https://hal.archives-ouvertes.fr/hal-03184841/file/elsarticle-template.pdf BibTex
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Sagar Verma, Shikha Singh, Angshul Majumdar. Multi-label LSTM autoencoder for non-intrusive appliance load monitoring. Electric Power Systems Research, Elsevier, 2021, 199, pp.107414. ⟨10.1016/j.epsr.2021.107414⟩. ⟨hal-03294549⟩
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Conference papers

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Alexandre Bône, Samy Ammari, Jean-Philippe Lamarque, Mickael Elhaik, Émilie Chouzenoux, et al.. Contrast-enhanced brain MRI synthesis with deep learning: key input modalities and asymptotic performance. ISBI 2021 - International Symposium on Biomedical Imaging, Apr 2021, Nice / Virtual, France. ⟨hal-03128023⟩
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https://hal.archives-ouvertes.fr/hal-03128023/file/ISBI_2021__VCE.pdf BibTex
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Snehil Dahiya, Shalini Sharma, Dhruv Sahnan, Vasu Goel, Emilie Chouzenoux, et al.. Would Your Tweet Invoke Hate on the Fly? Forecasting Hate Intensity of Reply Threads on Twitter. SIGKDD 2021 - 27th Conference on Knowledge Discovery and Data Mining, Aug 2021, Singapore, Singapore. ⟨10.1145/3447548.3467150⟩. ⟨hal-03281567⟩
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https://hal.archives-ouvertes.fr/hal-03281567/file/ads2577-dahiyaA.pdf BibTex
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Jean-Baptiste Fest, Emilie Chouzenoux. Stochastic Majorize-Minimize Subspace Algorithm with Application to Binary Classification. EUSIPCO 2021 - 29th European Signal Processing Conference, Aug 2021, Dublin / Virtual, Ireland. ⟨hal-03275377⟩
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https://hal.inria.fr/hal-03275377/file/S3MG_EUSIPCO.pdf BibTex
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Mouna Gharbi, Emilie Chouzenoux, Jean-Christophe Pesquet, Laurent Duval. GPU-based Implementations of MM Algorithms. Application to Spectroscopy Signal Restoration. EUSIPCO 2021 - 29th European Signal Processing Conference, Aug 2021, Dublin / Virtual, Ireland. ⟨hal-03275427v2⟩
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https://hal.inria.fr/hal-03275427/file/EUSIPCO_Draft_paper_Mouna_GHARBI_final_v.pdf BibTex
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Thomas Guilmeau, Emilie Chouzenoux, Víctor Elvira. Simulated annealing: a review and a new scheme. SSP 2021 - IEEE Statistical Signal Processing Workshop, Jul 2021, Rio de Janeiro, Brazil. ⟨hal-03275401⟩
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https://hal.inria.fr/hal-03275401/file/SSPsubmission2021_final.pdf BibTex
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Pooja Gupta, Jyoti Maggu, Angshul Majumdar, Emilie Chouzenoux, Giovanni Chierchia. ConFuse: Convolutional Transform Learning Fusion Framework For Multi-Channel Data Analysis. EUSIPCO 2020 - 28th European Signal Processing Conference, Jan 2021, Amsterdam / Virtual, Netherlands. ⟨hal-02943658⟩
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https://hal.archives-ouvertes.fr/hal-02943658/file/EUSIPCO_ConFuse_2020_CameraReady.pdf BibTex
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Surabhi Jagtap, Abdulkadir Çelikkanat, Aurélie Pirayre, Frederique Bidard, Laurent Duval, et al.. Multiomics Data Integration for Gene Regulatory Network Inference with Exponential Family Embeddings. 29th European Signal Processing Conference (EUSIPCO), Aug 2021, Dublin (Online), Ireland. ⟨hal-03336884⟩
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https://hal.archives-ouvertes.fr/hal-03336884/file/Multiomics_GRN_EUSIPCO_2021.pdf BibTex
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Charles Kantor, Marta Skreta, Brice Rauby, Léonard Boussioux, Emmanuel Jehanno, et al.. Geo-Spatiotemporal Features and Shape-Based Prior Knowledge for Fine-grained Imbalanced Data Classification. IJCAI 2021 - Workshop on AI for Social Good, Jan 2021, Tokyo, Japan. ⟨hal-03150686⟩
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https://hal.archives-ouvertes.fr/hal-03150686/file/IJCAI.pdf BibTex
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Elie Leroy, Arthur Marmin, Marc Castella, Laurent Duval. Weight identification through global optimization in a new hysteretic neural network model. ICASSP 2021 - 46th International Conference on Acoustics, Speech and Signal Processing, Jun 2021, Toronto (online), Canada. pp.5315-5319, ⟨10.1109/ICASSP39728.2021.9413383⟩. ⟨hal-03227078⟩
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https://hal.archives-ouvertes.fr/hal-03227078/file/article_icassp2021.pdf BibTex
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Yingping Li, Emilie Chouzenoux, Benoit Charmettant, Baya Benatsou, Jean-Philippe Lamarque, et al.. Lightweight U-Net for Lesion Segmentation in Ultrasound Images. ISBI 2021 - IEEE International Symposium on Biomedical Imaging, Apr 2021, Nice / Virtual, France. ⟨hal-03140737v2⟩
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https://hal.archives-ouvertes.fr/hal-03140737/file/final_submission_Lightweight%20U-net%20for%20lesion%20segmentation%20in%20ultrasound%20images.pdf BibTex
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Ségolène Martin, Emilie Chouzenoux, Jean-Christophe Pesquet. A Penalized Subspace Strategy for Solving Large-Scale Constrained Optimization Problems. EUSIPCO 2021 - 29th European Signal Processing Conference, Aug 2021, Dublin / Virtual, Ireland. ⟨hal-03275387⟩
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https://hal.archives-ouvertes.fr/hal-03275387/file/EUSIPCO_2021.pdf BibTex
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Leo Milecki, Sylvain Bodard, Jean-Michel Correas, Marc-Olivier Timsit, Maria Vakalopoulou. 3D Unsupervised Kidney Graft Segmentation Based on Deep Learning and Multi-Sequence MRI. IEEE ISBI 2021 - International Symposium on Biomedical Imaging, Apr 2021, Nice / Virtual, France. ⟨hal-03141528⟩
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https://hal.archives-ouvertes.fr/hal-03141528/file/ISBI21__home_papercept_embs.papercept.net_www_conferences_conferences_ISBI21_submissions_0601_FI.pdf BibTex
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Ana Neacsu, Kavya Gupta, Jean-Christophe Pesquet, Corneliu Burileanu. Signal Denoising Using a New Class of Robust Neural Networks. EUSIPCO 2020 - 28th European Signal Processing Conference, Jan 2021, Amsterdam, Netherlands. pp.1492-1496, ⟨10.23919/Eusipco47968.2020.9287630⟩. ⟨hal-03115064⟩
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Marion Savanier, Emilie Chouzenoux, Jean-Christophe Pesquet, Cyril Riddell, Yves Trousset. Proximal Gradient Algorithm in the Presence of Adjoint Mismatch. EUSIPCO 2020 - 28th European Signal Processing Conference, Jan 2021, Amsterdam (virtual), Netherlands. ⟨hal-02943659v2⟩
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https://hal.archives-ouvertes.fr/hal-02943659/file/Proximal_Gradient_Algorithm_in_the_Presence_of_Adjoint_Mismatch.pdf BibTex
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Wen Tang, Emilie Chouzenoux, Jean-Christophe Pesquet, Hamid Krim. Deep transform and metric learning networks. ICASSP 2021 - IEEE International Conference on Acoustics, Speech and Signal Processing, Jun 2021, Toronto Virtual, Canada. ⟨hal-03281571⟩
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https://hal.archives-ouvertes.fr/hal-03281571/file/ICASSP2021_wen_final.pdf BibTex
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Vlad Vasilescu, Ana Neacsu, Emilie Chouzenoux, Jean-Christophe Pesquet, Corneliu Burileanu. A Deep Learning Approach for Improved Segmentation of Lesions Related to Covid-19 Chest CT Scans. ISBI 2021 - IEEE International Symposium on Biomedical Imaging, Apr 2021, Nice / Virtual, France. ⟨hal-03188444⟩
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https://hal.archives-ouvertes.fr/hal-03188444/file/A_deep_learning_approach_for_improved_segmentation_of_lesions_related_to_COVID_19_chest_CT_scans.pdf BibTex
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Sagar Verma, Jean-Christophe Pesquet. Sparsifying Networks via Subdifferential Inclusion. ICML 2021 - Thirty-eighth International Conference on Machine Learning, Jul 2021, Virtual, France. ⟨hal-03294543⟩
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https://hal.archives-ouvertes.fr/hal-03294543/file/ICML2021_SIS.pdf BibTex
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Sagar Verma, Akash Panigrahi, Siddharth Gupta. QFabric: Multi-Task Change Detection Dataset. EARTHVISION 2021 Workshops - Large Scale Computer Vision for Remote Sensing Imagery: in conjunction with the Conference on Computer Vision and Pattern Recognition (CVPR 2021), Jun 2021, Virtual, France. ⟨hal-03294534⟩
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https://hal.archives-ouvertes.fr/hal-03294534/file/Earthvision_2021_QFabric.pdf BibTex

Poster communications

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Claire Lefort, Mathieu Chalvidal², Alexis Parenté, Véronique Blanquet, Henri Massias, et al.. FAMOUS pipeline: multiphoton microscopy and computational strategy for 3D imaging of biomedical sample. PSB Symposium "Frontiers in Bioimaging", Jul 2021, On line, France. ⟨hal-03280626⟩
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Claire Lefort, Mathieu Chalvidal, Alexis Parente, Véronique Blanquet, Henri Massias, et al.. Deep-3D-multiphoton imaging of whole biological structures with a computational assistance and the pipeline FAMOUS. Physics and Biological Systems 2021, Jun 2021, Grenoble, France. ⟨hal-03274262⟩
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Preprints, Working Papers, ...

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Mathieu Carriere, Frédéric Chazal, Marc Glisse, Yuichi Ike, Hariprasad Kannan. Optimizing persistent homology based functions. 2021. ⟨hal-02969305v2⟩
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https://hal.inria.fr/hal-02969305/file/_ICML21__Optimizing_persistent_homology_based_functions.pdf BibTex
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Emilie Chouzenoux, Cecile Della Valle, Jean-Christophe Pesquet. Inversion of Integral Models: a Neural Network Approach. 2021. ⟨hal-03243257⟩
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https://hal.archives-ouvertes.fr/hal-03243257/file/FBResNet_v1.pdf BibTex
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Víctor Elvira, Emilie Chouzenoux. Optimized Population Monte Carlo. 2021. ⟨hal-03136318v2⟩
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https://hal.archives-ouvertes.fr/hal-03136318/file/LPMC_TSP_R0_HAL.pdf BibTex
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Thomas Guilmeau, Alain Rapaport. Singular arcs in optimal periodic control problems with scalar dynamics and integral input constraint. 2021. ⟨hal-03103030⟩
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https://hal.inrae.fr/hal-03103030/file/Periodic_control___singular_arcs__scalar_dynamics.pdf BibTex
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Jean-Yves Tourneret, Adrian Basarab, Nora Leïla Ouzir, Qi Wei. Sparse representations and dictionary learning: from image fusion to motion estimation. 2021. ⟨hal-03130465⟩
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Sagar Verma. A Survey on Machine Learning Applied to Dynamic Physical Systems. 2021. ⟨hal-03120225⟩
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https://hal.archives-ouvertes.fr/hal-03120225/file/lit_rev_physics.pdf BibTex
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Farshad Veshki, Nora Leïla Ouzir, Sergiy Vorobyov, Esa Ollila. Coupled Feature Learning for Multimodal Medical Image Fusion. 2021. ⟨hal-03130475⟩
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