Journal articles

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Feriel Abboud, Marin Stamm, Emilie Chouzenoux, Jean-Christophe Pesquet, Hugues Talbot. Distributed Algorithms for Scalable Proximity Operator Computation and Application to Video Denoising. Digital Signal Processing, 2022, 128, pp.103610. ⟨10.1016/j.dsp.2022.103610⟩. ⟨hal-03684063v3⟩

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Younes Belkouchi, Hugues Talbot, Nathalie Lassau, L. Lawrance, S. Farhane, et al.. Better than RECIST and faster than iRECIST: Defining the immunotherapy progression decision score to better manage progressive tumors on immunotherapy. Annals of Oncology, 2022, 33, pp.S595-S596. ⟨10.1016/j.annonc.2022.07.159⟩. ⟨hal-03940635⟩

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Younes Belkouchi, Laetitia Nebot-Bral, Littisha Lawrance, Michele Kind, Clémence David, et al.. Predicting immunotherapy outcomes in patients with MSI tumors using NLR and CT global tumor volume. Frontiers in Oncology, 2022, 12, pp.982790. ⟨10.3389/fonc.2022.982790⟩. ⟨hal-04266174⟩

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Alexandre Bône, Samy Ammari, Yves Menu, Corinne Balleyguier, Eric Moulton, et al.. From dose reduction to contrast maximization: can deep learning amplify the impact of contrast media on brain MR image quality? A reader study. Investigative Radiology, 2022, 57 (8), pp.527-535. ⟨10.1097/RLI.0000000000000867⟩. ⟨hal-03535186⟩

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Abdulkadir Çelikkanat, Yanning Shen, Fragkiskos D. Malliaros. Multiple Kernel Representation Learning on Networks. IEEE Transactions on Knowledge and Data Engineering, In press, ⟨10.1109/tkde.2022.3172048⟩. ⟨hal-03686085⟩

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Guillaume Chassagnon, Constance de Margerie-Mellon, Maria Vakalopoulou, Rafael Marini, Trieu-Nghi Hoang-Thi, et al.. Artificial intelligence in lung cancer: current applications and perspectives. Japanese Journal of Radiology, 2022, 41, ⟨10.1007/s11604-022-01359-x⟩. ⟨hal-03939209⟩

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Guillaume Chassagnon, Alienor Campredon, Maria Vakalopoulou, Pierre-Régis Burgel. Diversity of approaches in artificial intelligence: an opportunity for discoveries in thoracic imaging. European Respiratory Journal, 2022, 60 (1), pp.2200022. ⟨10.1183/13993003.00022-2022⟩. ⟨hal-03939234⟩

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Emilie Chouzenoux, Jean-Baptiste Fest. SABRINA: A Stochastic Subspace Majorization-Minimization Algorithm. Journal of Optimization Theory and Applications, 2022, 195, pp.919-952. ⟨hal-03793623⟩

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Emilie Chouzenoux, Ségolène Martin, Jean-Christophe Pesquet. A Local MM Subspace Method for Solving Constrained Variational Problems in Image Recovery. Journal of Mathematical Imaging and Vision, In press, ⟨10.1007/s10851-022-01112-z⟩. ⟨hal-03740823⟩

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Víctor Elvira, Emilie Chouzenoux. Graphical Inference in Linear-Gaussian State-Space Models. IEEE Transactions on Signal Processing, 2022, 70, pp.4757 - 4771. ⟨hal-03783425⟩

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Víctor Elvira, Emilie Chouzenoux. Optimized Population Monte Carlo. IEEE Transactions on Signal Processing, 2022, 70, pp.2489-2501. ⟨10.1109/TSP.2022.3172619⟩. ⟨hal-03136318v3⟩

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Thomas Guilmeau, Alain Rapaport. Singular arcs in optimal periodic control problems with scalar dynamics and integral input constraint. Journal of Optimization Theory and Applications, 2022, 195, pp.548-574. ⟨10.1007/s10957-022-02095-y⟩. ⟨hal-03740426⟩

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Kavya Gupta, Fateh Kaakai, Beatrice Pesquet-Popescu, Jean-Christophe Pesquet, Fragkiskos D. Malliaros. Multivariate Lipschitz Analysis of the Stability of Neural Networks. Frontiers in Signal Processing, In press, ⟨10.3389/frsip.2022.794469⟩. ⟨hal-03621112⟩

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Yunshi Huang, Emilie Chouzenoux, Jean-Christophe Pesquet. Unrolled Variational Bayesian Algorithm for Image Blind Deconvolution. IEEE Transactions on Image Processing, 2022, 32, pp.430-445. ⟨10.1109/TIP.2022.3224322⟩. ⟨hal-03881393⟩

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Surabhi Jagtap, Abdulkadir Çelikkanat, Aurélie Pirayre, Frédérique Bidard, Laurent Duval, et al.. BraneMF : integration of biological networks for functional analysis of proteins. Bioinformatics, 2022, 38 (24), pp.5383-5389. ⟨10.1093/bioinformatics/btac691⟩. ⟨hal-03941785⟩

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Surabhi Jagtap, Aurélie Pirayre, Frédérique Bidard, Laurent Duval, Fragkiskos Malliaros. BRANEnet : embedding multilayer networks for omics data integration. BMC Bioinformatics, 2022, 23, pp.429. ⟨10.1186/s12859-022-04955-w⟩. ⟨hal-03846890⟩

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Thomas Klinge, Hugues Talbot, Ian Paddick, Sébastien Ourselin, Jamie R Mcclelland, et al.. Toward semi-automatic biologically effective dose treatment plan optimisation for Gamma Knife radiosurgery. Physics in Medicine and Biology, 2022, 67 (21), pp.215001. ⟨10.1088/1361-6560/ac8965⟩. ⟨hal-03943763⟩

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Maxime Lacroix, Theodore Aouad, Jean Feydy, David Biau, Frédérique Larousserie, et al.. Artificial intelligence in musculoskeletal oncology imaging: A critical review of current applications. Diagnostic and Interventional Imaging, 2022, ⟨10.1016/j.diii.2022.10.004⟩. ⟨hal-03909429⟩

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Yingping Li, Samy Ammari, Litti Lawrance, Arnaud Quillent, Tarek Assi, et al.. Radiomics-Based Method for Predicting the Glioma Subtype as Defined by Tumor Grade, IDH Mutation, and 1p/19q Codeletion. Cancers, 2022, 14 (7), pp.1778. ⟨10.3390/cancers14071778⟩. ⟨hal-03647258⟩

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Bin Liu, Dimitrios Papadopoulos, Fragkiskos D. Malliaros, Grigorios Tsoumakas, Apostolos Papadopoulos. Multiple similarity drug–target interaction prediction with random walks and matrix factorization. Briefings in Bioinformatics, 2022, 23 (5), ⟨10.1093/bib/bbac353⟩. ⟨hal-03910803⟩

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Aanchal Mongia, Stuti Jain, Emilie Chouzenoux, Angshul Majumdar. DeepVir, Graphical Deep Matrix Factorization for In Silico Antiviral Repositioning. Application to COVID19.. Journal of Computational Biology, 2022, 29 (5), pp.441-452. ⟨10.36227/techrxiv.12987497.v1⟩. ⟨hal-02946338⟩

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Raphael Naccache, Younes Belkouchi, Littisha Lawrance, Baya Benatsou, Joya Hadchiti, et al.. Prediction of Early Response to Immunotherapy: DCE-US as a New Biomarker. Cancers, 2022, 14 (5), pp.1337. ⟨10.3390/cancers14051337⟩. ⟨hal-03792594⟩

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George Panagopoulos, Fragkiskos Malliaros, Michalis Vazirgiannis. Multi-Task Learning for Influence Estimation and Maximization. IEEE Transactions on Knowledge and Data Engineering, 2022, 34 (9), pp.4398-4409. ⟨10.1109/TKDE.2020.3040028⟩. ⟨hal-04494198⟩

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Nicolas Passat, Phuc Ngo, Yukiko Kenmochi, Hugues Talbot. Homotopic affine transformations in the 2D Cartesian grid. Journal of Mathematical Imaging and Vision, 2022, 64 (7), pp.786-806. ⟨10.1007/s10851-022-01094-y⟩. ⟨hal-03630330⟩

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Marion Savanier, Emilie Chouzenoux, Jean-Christophe Pesquet, Cyril Riddell. Unmatched Preconditioning of the Proximal Gradient Algorithm. IEEE Signal Processing Letters, 2022, 29, pp.1122-1126. ⟨10.1109/LSP.2022.3169088⟩. ⟨hal-03654146⟩

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Maissa Sghaier, Emilie Chouzenoux, Jean-Christophe Pesquet, Serge Muller. A Novel Task-Based Reconstruction Approach for Digital Breast Tomosynthesis. Medical Image Analysis, 2022, 77, pp.102341. ⟨10.1016/j.media.2021.102341⟩. ⟨hal-02972386v2⟩

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Shikha Singh, Emilie Chouzenoux, Giovanni Chierchia, Angshul Majumdar. Multi-label Deep Convolutional Transform Learning for Non-intrusive Load Monitoring. ACM Transactions on Knowledge Discovery from Data (TKDD), 2022, 16 (5), pp.1-6. ⟨10.1145/3502729⟩. ⟨hal-03463403⟩

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Divyanshu Talwar, Aanchal Mongia, Emilie Chouzenoux, Angshul Majumdar. Binary Matrix Completion on Graphs: Application to Collaborative Filtering. Digital Signal Processing, 2022, 122, pp.103350. ⟨10.1016/j.dsp.2021.103350⟩. ⟨hal-03500279⟩

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Wen Tang, Emilie Chouzenoux, Jean-Christophe Pesquet, Hamid Krim. Deep Transform and Metric Learning Network: Wedding Deep Dictionary Learning and Neural Network. Neurocomputing, 2022, 509, pp.244-256. ⟨hal-03762444⟩

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Farshad Veshki, Nora Ouzir, Sergiy Vorobyov, Esa Ollila. Multimodal image fusion via coupled feature learning. Signal Processing, 2022, 200, pp.108637. ⟨10.1016/j.sigpro.2022.108637⟩. ⟨hal-03763293⟩

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Conference papers

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Théodore Aouad, Hugues Talbot. Binary morphological neural network. IEEE International Conference on Image Processing (ICIP), Oct 2022, Bordeaux, France. pp.3276-3280. ⟨hal-03617249⟩

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Théodore Aouad, Clementina Lopez-Medina, Charlotte Martin-Peltier, Adrien Bordner, Sisi Yang, et al.. Incrementally semi-supervised classification of arthritis inflammation on a clinical dataset. IEEE International Conference on Image Processing 2022, IEEE, Oct 2022, Bordeaux, France. ⟨hal-03830567⟩

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Hakim Benkirane, Maria Vakalopoulou, Stergios Christodoulidis, Ingrid-Judith Garberis, Stefan Michiels, et al.. Hyper-AdaC: Adaptive clustering-based hypergraph representation of whole slide images for survival analysis. ML4H 2022 - Machine Learning for Health, Nov 2022, New Orelans, France. pp.405-418. ⟨hal-04330534⟩

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Joseph Boyd, Irène Villa, Marie-Christine Mathieu, Eric Deutsch, Nikos Paragios, et al.. Region-Guided CycleGANs for Stain Transfer in Whole Slide Images. MICCAI 2022 - 25th International Conference on Medical Image Computing and Computer Assisted Intervention, Sep 2022, Singapore, Singapore. pp.356-365, ⟨10.1007/978-3-031-16434-7_35⟩. ⟨hal-03939229⟩

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Abdulkadir Çelikkanat, Fragkiskos D. Malliaros, Apostolos N Papadopoulos. NodeSig: Binary Node Embeddings via Random Walk Diffusion. ASONAM 2022 - IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining, Nov 2022, Istanbul, Turkey. ⟨hal-03910835⟩

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Cédric Delmon, Erwan Ferrandon, Emilie Chouzenoux, Audrey Prorot, Sophie Alain, et al.. Multiphoton microscopy for bacterial imaging: a label-free solution resting on endogenous two-photon fluorescence. PHOTOPTICS 2022 - 10th International Conference on Photonics, Optics and Laser Technology, Feb 2022, Virtual, France. pp.76-83, ⟨10.5220/0010979600003121⟩. ⟨hal-03598479⟩

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Alexandre Duval, Fragkiskos D. Malliaros. Higher-order Clustering and Pooling for Graph Neural Networks. CIKM 2022 - 31st ACM International Conference on Information & Knowledge Management, Oct 2022, Atlanta, Georgia, United States. pp.426-435, ⟨10.1145/3511808.3557353⟩. ⟨hal-03910823⟩

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Anurag Goel, Angshul Majumdar, Emilie Chouzenoux, Giovanni Chierchia. Deep Convolutional K-Means Clustering. ICIP 2022 - 29th IEEE International Conference on Image Processing, Oct 2022, Bordeaux, France. ⟨hal-03723459⟩

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Thomas Guilmeau, Emilie Chouzenoux, Víctor Elvira. Proximal-based adaptive simulated annealing for global optimization. IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP 2022), May 2022, Singapore / Virtual, China. ⟨hal-03740537⟩

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Kavya Gupta, Fateh Kaakai, Béatrice Pesquet-Popescu, Jean-Christophe Pesquet. Safe Design of Stable Neural Networks for Fault Detection in Small UAVs. SAFECOMP 2022 - The 41st International Conference on Computer Safety, Reliability and Security, Sep 2022, Munich, Germany. pp.263-275, ⟨10.1007/978-3-031-14862-0_19⟩. ⟨hal-03825404⟩

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Mewe-Hezoudah Kahanam, Laurent Le Brusquet, Segolene Martin, Jean-Christophe Pesquet. A Non-Convex Proximal Approach for Centroid-Based Classification. 2022 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP 2022), May 2022, Singapore, Singapore. pp.5702-5706, ⟨10.1109/ICASSP43922.2022.9747071⟩. ⟨hal-03688210⟩

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Loïc Le Bescond, Marvin Lerousseau, Ingrid Garberis, Fabrice André, Stergios Christodoulidis, et al.. Unsupervised Nuclei Segmentation using Spatial Organization Priors. MICCAI 2022 - 25th International Conference on Medical Image Computing and Computer Assisted Intervention, Sep 2022, Singapore, Singapore. pp.325-335. ⟨hal-03644463v2⟩

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Claire Lefort, Erwan Ferrandon, Émilie Chouzenoux, Cecile Mclaughlin, Sophie Alain. An instrumental and computational pipeline for visualizing free viral particles. SPIE Photonics Europe 2022, Apr 2022, Strasbourg / Virtual, France. pp.35, ⟨10.1117/12.2620496⟩. ⟨hal-03694309⟩

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Claire Lefort, Mathieu Chalvidal, Fabienne Baraige, Alexis Parente, Erwan Ferrandon, et al.. Axial organization of muscular myosin identified by the optical and computational pipeline FAMOUS. Unconventional Optical Imaging III, Apr 2022, Strasbourg, France. pp.3, ⟨10.1117/12.2621004⟩. ⟨hal-03694368⟩

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Ségolène Martin, Malik Boudiaf, Emilie Chouzenoux, Jean-Christophe Pesquet, Ismail Ben Ayed. Towards Practical Few-Shot Query Sets: Transductive Minimum Description Length Inference. 2022 Conference on Neural Information Processing Systems, Nov 2022, New Orleans, United States. ⟨hal-03827880⟩

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Leo Milecki, Vicky Kalogeiton, Sylvain Bodard, Dany Anglicheau, Jean-Michel Correas, et al.. Contrastive Masked Transformers for Forecasting Renal Transplant Function. MICCAI 2022 - 25th International Confernce on Medical Image Computing and Computer Assisted Intervention, Sep 2022, Singapore, Singapore. pp 244-254. ⟨hal-03738395⟩

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Leo Milecki, Vicky Kalogeiton, Sylvain Bodard, Dany Anglicheau, Jean-Michel Correas, et al.. Contrastive Masked Transformers for Forecasting Renal Transplant Function. Medical Image Computing and Computer Assisted Intervention, Sep 2022, Singapore, Singapore. pp.244-254, ⟨10.1007/978-3-031-16449-1_24⟩. ⟨hal-03943953⟩

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Ana Neacsu, Razvan Ciubotaru, Jean-Christophe Pesquet, Corneliu Burileanu. Design of Robust Complex-Valued Feed-Forward Neural Networks. 2022 30th European Signal Processing Conference (EUSIPCO), Aug 2022, Belgrade, Serbia. pp.1596-1600, ⟨10.23919/EUSIPCO55093.2022.9909696⟩. ⟨hal-03934660⟩

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Nora Leïla Ouzir, Jean-Christophe Pesquet, Frédéric Pascal. A Convex Formulation for the Robust Estimation of Multivariate Exponential Power Models. 2022 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP 2022), May 2022, Singapore, France. pp.5772-5776, ⟨10.1109/ICASSP43922.2022.9747354⟩. ⟨hal-03763278⟩

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Claire Rossignol, Florent Sureau, Émilie Chouzenoux, Claude Comtat, Jean-Christophe Pesquet. A Bregman Majorization-Minimization Framework for PET Image Reconstruction. ICIP 2022 - 29th IEEE International Conference on Image Processing, Oct 2022, Bordeaux, France. ⟨hal-03720547⟩

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Marion Savanier, Cyril Riddell, Yves Trousset, Emilie Chouzenoux, Jean-Christophe Pesquet. A decomposition method for directional Total Variation with application to needle reconstruction in interventional imaging. CT MEETING 2022 - The 7th International Meeting on Image Formation in X-Ray Computed Tomography, Jun 2022, Baltimore, United States. pp.123042W, ⟨10.1117/12.2647142⟩. ⟨hal-03770330⟩

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Gabriele Scrivanti, Émilie Chouzenoux, Jean-Christophe Pesquet. A CNC approach for Directional Total Variation. EUSIPCO 2022 - 30th European Signal Processing Conference, Aug 2022, Belgrade, Serbia. ⟨hal-03692840v2⟩

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Shikha Singh, Angshul Majumdar, Emilie Chouzenoux, Giovanni Chierchia. Semi-supervised Deep Convolutional Transform Learning for Hyperspectral Image Classification. ICIP 2022 - 29th IEEE International Conference on Image Processing, Oct 2022, Bordeaux, France. ⟨hal-03723462⟩

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Sagar Verma, Kavya Gupta. Robustness of Neural Networks used in Electrical Motor Time-Series. Workshop on Robustness in Sequence Modeling, 36th Conference on Neural Information Processing Systems (NeurIPS 2022), Nov 2022, New Orleans, United States. ⟨hal-03861148⟩

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Sagar Verma, Nicolas Henwood, Marc Castella, Jean-Christophe Pesquet, Al Kassem Jebai. Can GANs recover faults in electrical motor sensors?. ICLR 2022 - International Conference on Learning Representations (ICLR ), Apr 2022, Virtual, France. ⟨hal-03887143⟩

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Mario Viti, Hugues Talbot, Nicolas Gogin. Transformer graph network for coronary plaque localization in CCTA. ISBI 2022 - IEEE 19th International Symposium on Biomedical Imaging, Mar 2022, Kolkata, India. pp.1-5, ⟨10.1109/ISBI52829.2022.9761646⟩. ⟨hal-03724891⟩

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Jingwei Zhang, Xin Zhang, Ke Ma, Rajarsi Gupta, Joel Saltz, et al.. Gigapixel Whole-Slide Images Classification Using Locally Supervised Learning. MICCAI 2022 - 25th International Conference on Medical Image Computing and Computer Assisted Intervention, Locally supervised learning; Whole slide image; Multiple instance learning; Classification, Sep 2022, Singapore, Singapore. pp.192-201, ⟨10.1007/978-3-031-16434-7_19⟩. ⟨hal-03939232⟩

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Poster communications

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Younes Belkouchi, Hugues Talbot, Nathalie Lassau, Littisha Lawrance, Siham Farhane, et al.. Better than RECIST and faster than iRECIST: defining the Immunotherapy Progression Decision score to better manage progressive tumors on immunotherapy. ESMO 2022, Sep 2022, Paris, France. . ⟨hal-03780911⟩

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Reports

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Mathieu Chalvidal, Emilie Chouzenoux, Jean-Baptiste Fest, Claire Lefort. Block Delayed Majorize-Minimize Subspace Algorithm for Large Scale Image Restoration. [Research Report] Inria Saclay - Île de France. 2022. ⟨hal-03814231⟩

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Víctor Elvira, Emilie Chouzenoux, Ömer Deniz Akyildiz, Luca Martino. Gradient-based Adaptive Importance Samplers. Inria Saclay - Île de France. 2022. ⟨hal-03920127⟩

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Thomas Guilmeau, Emilie Chouzenoux, Víctor Elvira. Regularized Rényi divergence minimization through Bregman proximal gradient algorithms. Inria Saclay - Île de France. 2022. ⟨hal-03927834⟩

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Pooja Gupta, Angshul Majumdar, Emilie Chouzenoux, Giovanni Chierchia. DeConDFFuse : Predicting Drug-Drug Interaction using joint Deep Convolutional Transform Learning and Decision Forest fusion framework. Inria Saclay. 2022. ⟨hal-03897934⟩

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Yunshi Huang, Emilie Chouzenoux, Víctor Elvira, Jean-Christophe Pesquet. Efficient Bayes Inference in Neural Networks through Adaptive Importance Sampling. Inria Saclay - Île de France. 2022. ⟨hal-03920115⟩

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Stuti Jain, Emilie Chouzenoux, Angshul Majumdar. Deep Probabilistic Matrix Factorization on Graphs: Application to Drug Repositioning for Monkeypox. Inria Saclay. 2022. ⟨hal-03878514⟩

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Marion Savanier, Emilie Chouzenoux, Jean-Christophe Pesquet, Cyril Riddell. Deep Unfolding of the DBFB Algorithm with Application to ROI CT Imaging with Limited Angular Density. Inria Saclay. 2022. ⟨hal-03881278v3⟩

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Theses

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Marion Savanier. Méthodes de point fixe pour la reconstruction en Cone-beam CT sur arceau interventionnel. Signal and Image Processing. Université Paris-Saclay, 2022. English. ⟨NNT : 2022UPAST130⟩. ⟨tel-03988504⟩

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Mario Viti. Automated prediction of major adverse cardiovascular events. Artificial Intelligence [cs.AI]. Université Paris-Saclay, 2022. English. ⟨NNT : 2022UPASG084⟩. ⟨tel-04021981⟩

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Preprints, Working Papers, ...

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Théodore Aouad, Hugues Talbot. Binary Multi Channel Morphological Neural Network. 2022. ⟨hal-03644498⟩

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Ewa Bednarczuk, Giovanni Bruccola, Gabriele Scrivanti, The Hung Tran. Calculus rules for proximal ε-subdifferentials and inexact proximity operators for weakly convex functions. 2022. ⟨hal-03909061⟩

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Shubham Goswami, Sagar Verma, Kavya Gupta, Siddharth Gupta. FloodNet-to-FloodGAN : Generating Flood Scenes in Aerial Images. 2022. ⟨hal-03846063⟩

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Sagar Verma, Siddharth Gupta, Kavya Gupta. Aligning Geospatial AI for Disaster Relief with The Sphere Handbook. 2022. ⟨hal-03861146⟩

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