Publications HAL du labo/EPI opis;galen;galen-post;cvn

Journal articles

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Julien Ajdenbaum, Emilie Chouzenoux, Claire Lefort, Ségolène Martin, Jean-Christophe Pesquet. A Novel Variational Approach for Multiphoton Microscopy Image Restoration: from PSF Estimation to 3D Deconvolution. Inverse Problems, 2024, 40 (6), ⟨10.1088/1361-6420/ad3c67⟩. ⟨hal-04296247v2⟩
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https://hal.science/hal-04296247/file/main.pdf BibTex
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Samy Ammari, Arnaud Quillent, Víctor Elvira, François Bidault, Gabriel Garcia, et al.. Using Machine Learning on MRI Radiomics to Diagnose Parotid Tumours Before Comparing Performance with Radiologists: A Pilot Study. Journal of Imaging Informatics in Medicine, 2024, Online ahead of print. ⟨10.1007/s10278-024-01255-y⟩. ⟨hal-04734195⟩
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https://hal.science/hal-04734195/file/postprint.pdf https://hal.science/hal-04734195/file/preprint.pdf BibTex
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Theodore Aouad, Valerie Laurent, Paul Levant, Agnes Rode, Nina Brillat-Savarin, et al.. Detection and characterization of pancreatic lesion with artificial intelligence: The SFR 2023 artificial intelligence data challenge. Diagnostic and Interventional Imaging, 2024, 105 (10), pp.395-399. ⟨10.1016/j.diii.2024.07.002⟩. ⟨hal-04670352⟩
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Aurélie Beaufrère, Nora Ouzir, Paul Emile Zafar, Astrid Laurent-Bellue, Miguel Albuquerque, et al.. Primary liver cancer classification from routine tumour biopsy using weakly supervised deep learning. JHEP Reports Innovation in Hepatology, 2024, 6 (3), pp.101008. ⟨10.1016/j.jhepr.2024.101008⟩. ⟨hal-04534805⟩
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https://hal.science/hal-04534805/file/published_paper.pdf BibTex
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Jérôme Bolte, Edouard Pauwels, Antonio José Silveti-Falls. Differentiating Nonsmooth Solutions to Parametric Monotone Inclusion Problems. SIAM Journal on Optimization, 2024, 34 (1), 27 p. ⟨10.1137/22M1541630⟩. ⟨hal-03900339⟩
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https://hal.science/hal-03900339/file/main.pdf BibTex
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Jhon Castro-Correa, Jhony Giraldo, Mohsen Badiey, Fragkiskos D. Malliaros. Gegenbauer Graph Neural Networks for Time-Varying Signal Reconstruction. IEEE Transactions on Neural Networks and Learning Systems, 2024, ⟨10.1109/TNNLS.2024.3381069⟩. ⟨hal-04541700⟩
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https://hal.science/hal-04541700/file/TNNLS___Time_varying_reconstruction_using_GNNs_Revision_1%20%281%29.pdf BibTex
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Jia Chen, Congcong Wang, Fan Shi, Mounir Kaaniche, Meng Zhao, et al.. DSNet: A Dynamic Squeeze Network for Real-time Weld Seam Image Segmentation. Engineering Applications of Artificial Intelligence, 2024. ⟨hal-04505581⟩
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https://hal.science/hal-04505581/file/DSN_Revised_accepted.pdf BibTex
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Emilie Chouzenoux, Víctor Elvira. Sparse Graphical Linear Dynamical Systems. Journal of Machine Learning Research, 2024, 25 (223), pp.1-53. ⟨hal-04358490v2⟩
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https://inria.hal.science/hal-04358490/file/graphem_Q_R1.pdf BibTex
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Emilie Chouzenoux, Marie-Caroline Corbineau, Jean-Christophe Pesquet, Gabriele Scrivanti. A variational approach for joint image recovery and feature extraction based on spatially varying generalised Gaussian models. Journal of Mathematical Imaging and Vision, In press. ⟨hal-03591742v3⟩
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https://hal.science/hal-03591742/file/SCRIVANTI_SSVM_Journal.pdf BibTex
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Emilie Chouzenoux, Jean-Christophe Pesquet, Fernando Roldán. Solution of Mismatched Monotone+Lipschitz Inclusion Problems. SIAM Journal on Optimization, In press, ⟨10.48550/arXiv.2310.06402⟩. ⟨hal-04237154⟩
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https://inria.hal.science/hal-04237154/file/2310.06402.pdf BibTex
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Aref Einizade, Jhony H. Giraldo, Fragkiskos D. Malliaros, Sepideh Hajipour Sardouie. Estimation of a causal directed acyclic graph process using non-gaussianity. Digital Signal Processing, 2024, 146, pp.104400. ⟨10.1016/j.dsp.2024.104400⟩. ⟨hal-04541701⟩
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https://hal.science/hal-04541701/file/Estimation_of_a_Causal_Directed_Acyclic_Graph_Process_using_Non_Gaussianity%20%281%29.pdf BibTex
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Mouna Gharbi, Emilie Chouzenoux, Jean-Christophe Pesquet. An Unrolled Half-Quadratic Approach for Sparse Signal Recovery in Spectroscopy. Signal Processing, 2024, 218, ⟨10.1016/j.sigpro.2023.109369⟩. ⟨hal-04229774v2⟩
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https://inria.hal.science/hal-04229774/file/Main_revised_merged.pdf BibTex
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Thomas Guilmeau, Emilie Chouzenoux, Víctor Elvira. A Divergence-Based Condition to Ensure Quantile Improvement in Black-Box Global Optimization. IEEE Transactions on Evolutionary Computation, 2024, pp.1-1. ⟨10.1109/TEVC.2024.3452420⟩. ⟨hal-04711649⟩
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https://hal.science/hal-04711649/file/divergenceConditionNeutral.pdf BibTex
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Thomas Guilmeau, Alain Rapaport. Multiplicity of neutrally stable periodic orbits with coexistence in the chemostat subject to periodic removal rate. SIAM Journal on Applied Mathematics, 2024, 84 (1), pp.39-59. ⟨10.1137/23M1552450⟩. ⟨hal-04248438⟩
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https://hal.inrae.fr/hal-04248438/file/MultispeciesChemostat.pdf BibTex
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Thomas Guilmeau, Emilie Chouzenoux, Víctor Elvira. On variational inference and maximum likelihood estimation with the $ \lambda $-exponential family. Foundations of Data Science, 2024, 6 (1), pp.85-123. ⟨10.3934/fods.2024011⟩. ⟨hal-04616759⟩
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https://inria.hal.science/hal-04616759/file/VI_and_MLE_over_lambda_exponential_families_HAL.pdf BibTex
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Pooja Gupta, Anurag Goel, Angshul Majumdar, Emilie Chouzenoux, Giovanni Chierchia. DeConFCluster: Deep Convolutional Transform Learning based Multiview Clustering Fusion Framework. Signal Processing, In press, 224 (109597), ⟨10.1016/j.sigpro.2024.109597⟩. ⟨hal-04635484⟩
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https://inria.hal.science/hal-04635484/file/DeConFCluster__Deep_Convolutional_Transform_Learning_based_Multiview_Clustering_Fusion_Framework_SigPro.pdf BibTex
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Ana-Antonia Neacșu, Jean-Christophe Pesquet, Vlad Vasilescu, Corneliu Burileanu. ABBA Neural Networks: Coping with Positivity, Expressivity, and Robustness. SIAM Journal on Mathematics of Data Science, In press, 6 (3), ⟨10.1137/23M1589591⟩. ⟨hal-04386260v2⟩
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https://hal.science/hal-04386260/file/ABBA_Neural_Networks.pdf BibTex
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Nora Ouzir, Frédéric Pascal, Jean-Christophe Pesquet. Convex Parameter Estimation of Perturbed Multivariate Generalized Gaussian Distributions. IEEE Transactions on Signal Processing, 2024. ⟨hal-04366765v2⟩
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https://hal.science/hal-04366765/file/Ouzir2024_Convex_Parameter_Estimation_of_Perturbed_Multivariate_Generalized_Gaussian_Distributions.pdf BibTex
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Quentin Vanderbecq, Maxence Gelard, Jean-Christophe Pesquet, Mathilde Wagner, Lionel Arrive, et al.. Deep Learning for Automatic Bowel-Obstruction Identification on Abdominal CT. European Radiology, 2024, 34, pp.5842-5853. ⟨hal-04416987⟩
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https://inria.hal.science/hal-04416987/file/pdf_merged.pdf BibTex

Conference papers

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Alix Chazottes, Emilie Chouzenoux, Jean-Christophe Pesquet, Florent Sureau. Deep Equilibrium for Hyperparameter Estimation in Dynamic PET Reconstruction. MIC 2024 - IEEE Medical Imaging Conference, Oct 2024, Tampa (Florida), United States. ⟨hal-04707560⟩
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https://inria.hal.science/hal-04707560/file/MIC_2024.pdf BibTex
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Emilie Chouzenoux, Víctor Elvira. Graphical inference in non-Markovian linear-Gaussian state-space models. ICASSP 2024 - IEEE International Conference on Acoustics, Speech and Signal Processing, Apr 2024, Seoul, South Korea. ⟨10.1109/ICASSP48485.2024.10447747⟩. ⟨hal-04417208⟩
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https://inria.hal.science/hal-04417208/file/ICASSP2024_NM_GRAPHEM.pdf BibTex
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Rajaa El Hamdani, Thomas Bonald, Fragkiskos D. Malliaros, Nils Holzenberger, Fabian M. Suchanek. The Factuality of Large Language Models in the Legal Domain. CIKM 2024 - 33rd ACM International Conference on Information and Knowledge Management, Oct 2024, Boise Idaho, United States. ⟨hal-04701151⟩
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https://telecom-paris.hal.science/hal-04701151/file/factuality_legal_LLM.pdf BibTex
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Mouna Gharbi, Silvia Villa, Emilie Chouzenoux, Jean-Christophe Pesquet, Laurent Duval. Unrolled deep networks for sparse signal restoration in analytical chemistry. MLSP 2024 - 34th IEEE International Workshop on Machine Learning for Signal Processing, IEEE, Sep 2024, Londres, United Kingdom. ⟨hal-04707472⟩
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https://inria.hal.science/hal-04707472/file/Deep_Unrolling_MLSP_2024_nocopyright.pdf BibTex
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Thomas Guilmeau, Nicola Branchini, Emilie Chouzenoux, Víctor Elvira. Adaptive importance sampling for heavy-tailed distributions via α-divergence minimization. AISTATS 2024 - 27th International Conference on Artificial Intelligence and Statistics, May 2024, Valencia, Spain. ⟨hal-04506761⟩
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https://hal.science/hal-04506761/file/camera-ready.pdf BibTex
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Ségolène Martin, Yunshi Huang, Fereshteh Shakeri, Jean-Christophe Pesquet, Ismail Ben Ayed. Transductive Zero-Shot and Few-Shot CLIP. CVPR 2024 - IEEE Conference on Computer Vision and Pattern Recognition, Jun 2024, Seattle, Washington, United States. ⟨hal-04534868⟩
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https://hal.science/hal-04534868/file/main.pdf BibTex
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Julie Mordacq, Leo Milecki, Maria Vakalopoulou, Steve Oudot, Vicky Kalogeiton. ADAPT: Multimodal Learning for Detecting Physiological Changes under Missing Modalities. MIDL 2024 - Medical Imaging with Deep Learning, Jul 2024, Paris, France. ⟨hal-04597429⟩
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https://hal.science/hal-04597429/file/MIDL%20%281%29.pdf BibTex
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Julie Mordacq, Leo Milecki, Maria Vakalopoulou, Steve Oudot, Vicky Kalogeiton. Multimodal Learning for Detecting Stress under Missing Modalities. WiCV 2024 - Women in Computer Vision workshop In conjunction with CVPR, Jun 2024, Seattle, United States. ⟨hal-04635922⟩
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https://hal.science/hal-04635922/file/WiCV___camera_ready%20%283%29.pdf BibTex
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George Panagopoulos, Daniele Malitesta, Fragkiskos D Malliaros, Jun Pang. Uplift Modeling Under Limited Supervision. ECML PKDD 2024 - European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases, Sep 2024, Vilnius, Lithuania. ⟨hal-04601553⟩
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https://hal.science/hal-04601553/file/UMGNet_ECML-PKDD_2024.pdf BibTex
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Aymen Sadraoui, Astrid Laurent-Bellue, Mounir Kaaniche, Amel Benazza-Benyahia, Catherine Guettier, et al.. Unrolled projected gradient algorithm for stain separation in digital histopathological images. ICIP 2024 - IEEE International Conference on Image Processing, Oct 2024, Abu Dhabi, United Arab Emirates. ⟨hal-04444439⟩
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https://hal.science/hal-04444439/file/ICIP_2024_stainDeconv.pdf BibTex
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Aymen Sadraoui, Ségolène Martin, Eliott Barbot, Astrid Laurent-Bellue, Jean-Christophe Pesquet, et al.. A transductive few-shot learning approach for classification of digital histopathological slides from liver cancer. ISBI 2024 - 21st IEEE International Symposium on Biomedical Imaging, May 2024, Athènes, Greece. ⟨hal-04305713v2⟩
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https://hal.science/hal-04305713/file/main.pdf BibTex
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Raoul Sallé de Chou, Mohamed Ali Srir, Laurent Najman, Nicolas Passat, Hugues Talbot, et al.. Convex optimization for binary tree-based transport networks. International Conference on Discrete Geometry and Mathematical Morphology (DGMM), 2024, Florence, Italy. pp.217-228, ⟨10.1007/978-3-031-57793-2_17⟩. ⟨hal-04359833⟩
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https://inria.hal.science/hal-04359833/file/DGMM2024_paper_23.pdf BibTex
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Vlad Vasilescu, Ana Neacsu, Jean-Christophe Pesquet. Are almost non-negative neural networks universal approximators?. MLSP 2024 - IEEE International Workshop on Machine Learning for Signal Processing Search form Search, Sep 2024, London, United Kingdom. ⟨hal-04698445⟩
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https://hal.science/hal-04698445/file/ABBA_MLSP%20%281%29.pdf BibTex
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Mathieu Vu, Emilie Chouzenoux, Jean-Christophe Pesquet, Stéphane Boutinon, Marius Peloux, et al.. Deep learning method for accessible eccentric photorefraction. ISBI 2024 - 21st IEEE International Symposium on Biomedical Imaging, May 2024, Athènes, Greece. ⟨hal-04488060⟩
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https://inria.hal.science/hal-04488060/file/deep_photorefraction_isbi.pdf BibTex

Book sections

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Alessandro Benfenati, Emilie Chouzenoux, Giorgia Franchini, Salla Latva-Äijö, Dominik Narnhofer, et al.. Majoration-Minimization for Sparse SVMs. Advanced Techniques in Optimization for Machine Learning and Imaging, 61, Springer Nature Singapore, pp.31-54, 2024, Springer INdAM Series - INdAM Workshop: Advanced Techniques in Optimization for Machine learning and Imaging, 978-981-97-6771-7. ⟨10.1007/978-981-97-6769-4_3⟩. ⟨hal-04719965⟩
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https://inria.hal.science/hal-04719965/file/ATOMI_Manuscript.pdf BibTex

Habilitation à diriger des recherches

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Fragkiskos D. Malliaros. A Machine Learning Tour in Network Science. Machine Learning [cs.LG]. Universite Paris-Saclay, 2024. ⟨tel-04558005⟩
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https://hal.science/tel-04558005/file/HDR_Fragkiskos_Malliaros.pdf BibTex

Proceedings

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Ségolène Martin, Julien Ajdenbaum, Emilie Chouzenoux, Laetitia Magnol, Véronique Blanquet, et al.. Estimating the point-spread-function using 1 µm diameter microspheres for image restoration in biomedical multiphoton microscopy. SPIE Photonics Europe 2024, Proceedings of SPIE, the International Society for Optical Engineering, SPIE, pp.22, 2024, ⟨10.1117/12.3016624⟩. ⟨hal-04669405⟩
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https://hal.science/hal-04669405/file/MPM_PSF_3D_1um.pdf BibTex

Reports

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Thomas Guilmeau, Emilie Chouzenoux, Víctor Elvira. Regularized Rényi divergence minimization through Bregman proximal gradient algorithms. Inria Saclay - Île de France. 2024. ⟨hal-03927834v2⟩
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https://hal.science/hal-03927834/file/RegularizedR%C3%A9nyiDivBPG_HAL%20%281%29.pdf BibTex

Preprints, Working Papers, ...

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Enzo Battistella, Maria Vakalopoulou, Nikos Paragios, Eric Deutsch. GHOST: Graph-based Higher-Order Similarity Transformation for Classification. 2024. ⟨hal-03563705v2⟩
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https://centralesupelec.hal.science/hal-03563705/file/main.pdf BibTex
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Younes Belkouchi, Jean-Christophe Pesquet, Audrey Repetti, Hugues Talbot. Learning truly monotone operators with applications to nonlinear inverse problems. 2024. ⟨hal-04530164⟩
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https://arxiv.org/pdf/2404.00390 BibTex
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Flavia Chorobura, Ion I Necoara, Jean-Christophe Pesquet. AN ADAPTIVE FORWARD-BACKWARD-FORWARD SPLITTING ALGORITHM FOR SOLVING PSEUDO-MONOTONE INCLUSIONS. 2024. ⟨hal-04571492⟩
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https://hal.science/hal-04571492/file/Game_Theoretic_Framework-2.pdf BibTex
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Jean-Luc Dupire, Younes Belkouchi, Leo Stepien, Nicolas Billet, Lama Dawi, et al.. 3D lung nodule segmentation from 2D annotations using morphological operations. 2024. ⟨hal-04418151⟩
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https://hal.science/hal-04418151/file/Manuscript_JL_DGMM.pdf BibTex
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Alexandre Duval, Simon V Mathis, Chaitanya K Joshi, Victor Schmidt, Santiago Miret, et al.. A Hitchhiker's Guide to Geometric GNNs for 3D Atomic Systems. 2024. ⟨hal-04409413⟩
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https://hal.science/hal-04409413/file/Hitchhiker%27s%20Guide.pdf BibTex
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Pedro Gajardo, Thomas Guilmeau, Cristopher Hermosilla. Sensitivity Analysis of the Set of Sustainable Thresholds. 2024. ⟨hal-04112730v2⟩
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https://hal.science/hal-04112730/file/final_Sensitivity_SST.pdf BibTex
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Thomas Guilmeau, Emilie Chouzenoux, Víctor Elvira. A divergence-based condition to ensure quantile improvement in black-box global optimization. 2024. ⟨hal-04616771⟩
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https://inria.hal.science/hal-04616771/file/divergenceBasedCondQuantileImprovement.pdf BibTex
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Loïc Le Bescond, Marvin Lerousseau, Fabrice Andre, Hugues Talbot. SparseXMIL: Leveraging spatial context for classifying whole slide images in digital pathology. 2024. ⟨hal-04531177⟩
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https://hal.science/hal-04531177/file/paper_XMIL.pdf BibTex
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Sylvain Lempereur, Matthieu Simion, Elodie Machado, Fabrice Licata, Lilian Buzer, et al.. ZeBraInspector, a platform for the automated segmentation and analysis of body and brain volumes in whole 5 dpf zebrafish following simultaneous visualization with identical orientations. 2024. ⟨hal-04580401⟩
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https://hal.science/hal-04580401/file/2020.10.26.353656v2.full.pdf BibTex
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Joeri Nicolaes, Evi Tselenti, Theodore Aouad, Clementina López-Medina, Antoine Feydy, et al.. Performance Analysis of a Deep Learning Algorithm to Detect MRI Positive Sacroiliac Joints in Patients with Axial Spondyloarthritis According to the Assessment of SpondyloArthritis international Society 2009 Definition. 2024. ⟨hal-04402030⟩
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Leo Stepien, Younes Belkouchi, Jean-Luc Dupire, Nicolas Billet, Lama Dawi, et al.. Supervoxel based 3D diseased lung segmentation. 2024. ⟨hal-04418158⟩
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https://hal.science/hal-04418158/file/Manuscript_DGMM.pdf BibTex